[SOSlib-devel] [ sbmlsolver-Bugs-1951462 ] Compartment size could be absent

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Bugs item #1951462, was opened at 2008-04-25 02:24
Message generated for change (Comment added) made by nobody
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Category: solver malfunction
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: Chen (ch_li)
Assigned to: Nobody/Anonymous (nobody)
Summary: Compartment size could be absent

Initial Comment:
Hello,

I have a model, which compartment was not used by any species or reactions.

For instance, in the model I attached, its species has intialAmount and hasOnlySubstanceUnits is TRUE. The whole model's reactions doesn't nothing with the compartment. For this model, it should be able to be simulated without given compartment size.

Regards,
Chen

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Comment By: Nobody/Anonymous (nobody)
Date: 2008-04-28 01:50

Message:
Logged In: NO 

hi Chen:

Looks like SOSlib returns a fatal error message "No value found for
compartment cell" in this  case?

BTW, it seems MathSBML integrates the model correctly, but it does so with
the complaint that value for compartment is absent. 

James

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You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=744811&aid=1951462&group_id=139893