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Re: [SOSlib-devel] [SOSlib-discuss] Regarding inputting of kinetic rate constants
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From: Roy W. <rwo...@uc...> - 2007-04-11 21:09:24
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Hi Phillip, Did you consider using it as a library instead of using the command line utility? An example of a library usage that changes a parameter can be found: http://www.csc.fi/english/research/sciences/bioscience/programs/sysbio/parameterChange.c It will be almost the exact thing to change initial conditions, without parsing the xml file. Roy Phillip Tabor wrote: > Hello, > > I am attempting to use the odeSolver commandline tool and I'd like to > know if there is a way to input the initial rate constants as an > array. In other words, does the program have to parse the .xml file at > every iteration, or is there a way to override this and simply pass it > an array of numbers to be assigned as rates to the odes? > > I am attempting to use the software to fit kinetic rate constants with > an evolutionary algorithm. This requires many executions of the > program, and having to parse the .xml file on each run will add a > considerable amount of overhead to the execution time. > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------- > Take Surveys. Earn Cash. Influence the Future of IT > Join SourceForge.net's Techsay panel and you'll get the chance to share your > opinions on IT & business topics through brief surveys-and earn cash > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > ------------------------------------------------------------------------ > > _______________________________________________ > sbmlsolver-discuss mailing list > sbm...@li... > https://lists.sourceforge.net/lists/listinfo/sbmlsolver-discuss > ------------------------------------------------------------------------- Take Surveys. Earn Cash. Influence the Future of IT Join SourceForge.net's Techsay panel and you'll get the chance to share your opinions on IT & business topics through brief surveys-and earn cash http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV _______________________________________________ sbmlsolver-discuss mailing list sbm...@li... https://lists.sourceforge.net/lists/listinfo/sbmlsolver-discuss |
