Re: [SOSlib-devel] [SOSlib-discuss] how to compile SBML ODESolver library under Mac OS X

[Rainer M. <ra...@tb...>]

Hi Hendrik,

Sorry for the late reply. I just came back from the ICSB in Tokyo where I=
=20
was quite busy and had only limited access to internet.

Thank you very much for the instructions! I hope we can make installation=
=20
on Mac OS and other systems easier with the next release. Your=20
instructions will help.

I hope SOSlib works fine for you. There is not much (or no) activity=20
on the discuss list. Although we have ca. 500 downloads and no of many=20
projects using SOSlib, noone subscribed to the list and we get almost no=20
feedback. If you have any requests or suggestions, please write us!

Thanks,
Rainer




On Wed, 11 Oct 2006, Hendrik Fuss wrote:

> Hi everyone,
>
> one of the older threads in the archive was about problems running
> configure under Linux. After a long day, I managed to compile SOSlib
> under Mac OS 10.4 and thought I'd share this brief how-to with you.
>
> 1. As mentioned in requirements you need SUNDIALS 2.1.1 and *NOT* the
> latest version. I can confirm version 2.2.0 does NOT work.
>
> 2. Configure sundials with "./configure --prefix=3D/usr/local", make
> and make install as usual
>
> 3. Change to SBML_odeSolver directory. If you compiled libSBML with
> expat rather than xerces, the configure script needs modification.
> Run the following command:
>
> perl -p -i~ -e 's/-lxerces-c/-lexpat/g;' examples/Makefile.in
> examples/Makefile.am odeSolver/Makefile.am odeSolver/Makefile.in
> configure
>
> 4. Configure should now run smoothly
>
> 5. On my system, make threw an error in the very last linking step,
> saying that it couldn't find libexpat, even though /sw/lib was
> included in the LDFLAGS environment variable. I simply linked the
> file manually by just adding -L/sw/lib to the gcc command line.
>
> Done. make install worked fine for me. Hope this was helpful.
>
> Hendrik
>
> --
> Hendrik Fu=DF
> PhD student
> Systems Biology Research Group
>
> University of Ulster, School of Biomedical Sciences
> Cromore Road, Coleraine, BT52 1SA, Northern Ireland
>
>
>
>
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