[SOSlib-devel] [SOSlib-discuss] how to compile SBML ODESolver library under Mac OS X

[Hendrik F. <fu...@ul...>]

Hi everyone,

one of the older threads in the archive was about problems running  =

configure under Linux. After a long day, I managed to compile SOSlib  =

under Mac OS 10.4 and thought I'd share this brief how-to with you.

1. As mentioned in requirements you need SUNDIALS 2.1.1 and *NOT* the  =

latest version. I can confirm version 2.2.0 does NOT work.

2. Configure sundials with "./configure --prefix=3D/usr/local", make  =

and make install as usual

3. Change to SBML_odeSolver directory. If you compiled libSBML with  =

expat rather than xerces, the configure script needs modification.  =

Run the following command:

perl -p -i~ -e 's/-lxerces-c/-lexpat/g;' examples/Makefile.in  =

examples/Makefile.am odeSolver/Makefile.am odeSolver/Makefile.in  =

configure

4. Configure should now run smoothly

5. On my system, make threw an error in the very last linking step,  =

saying that it couldn't find libexpat, even though /sw/lib was  =

included in the LDFLAGS environment variable. I simply linked the  =

file manually by just adding -L/sw/lib to the gcc command line.

Done. make install worked fine for me. Hope this was helpful.

Hendrik

--
Hendrik Fu=DF
PhD student
Systems Biology Research Group

University of Ulster, School of Biomedical Sciences
Cromore Road, Coleraine, BT52 1SA, Northern Ireland




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