Re: [SOSlib-devel] Compilation errors on Kubuntu linux.[Scanned]

[Rainer M. <ra...@tb...>]

i have added this to the wiki.


On Mon, 17 Jul 2006, Andrew Finney wrote:

> Folks
>
> Ideally the configure scripts should work this out - but I'm not
> volunteering :-)
>
> yours
>
> Andrew
>
>> -----Original Message-----
>> From: sbm...@li...
>> [mailto:sbm...@li...] On
>> Behalf Of Rainer Machne
>> Sent: 17 July 2006 10:43
>> To: W Eryk Wolski
>> Cc: sbm...@li...
>> Subject: Re: [SOSlib-devel] Compilation errors on Kubuntu
>> linux.[Scanned]
>>
>> Hi Eryk,
>>
>> acosh, asinh and atanh are defined in tgmath.h, which
>> provides some additional functions to the ones in math.
>>
>> However, it wasn't availalbe on some platforms so Andrew (i
>> think) included these functions within WIN32 tags but i
>> removed those tags because of a general ISO C90
>> incompatibility of tgmath.h (and SOSlib wants to be ISO C90).
>>
>> Maybe your math.h includes the tgmath.h ?
>> I think that was the reason why it initally worked here on
>> our machines without either those local declarations or
>> including tgmath.h
>>
>> Anyways, you can try to remove the static function
>> definitions for acsoh, asinh and atanh from your local copy
>> of processAST.c and rely on your local definitions (should be
>> OK!) or check whether the math.h on your system includes
>> tgmath.h and use another version of math.h
>>
>> I am not so familiar with all that ISO C stuff. So maybe
>> someone else can give a more detailed answer.
>>
>> Maybe we need to add some tags like
>> #ifdef acosh
>> etc. around these function declarations?
>>
>> Rainer
>>
>>
>>
>>
>>
>>
>> On Thu, 13 Jul 2006, W Eryk Wolski wrote:
>>
>>> Dear all,
>>>
>>> Getting compilation errors on Kubuntu 6.0.6 with gcc 4.0.3
>>>
>>>
>>>
>>>        then mv -f ".deps/odeConstruct.Tpo" ".deps/odeConstruct.Po";
>>> else rm -f ".deps/odeConstruct.Tpo"; exit 1; fi if gcc
>> -DHAVE_CONFIG_H
>>> -I. -I. -I../src/sbmlsolver -I/home/witek/opt/sundials/include
>>> -I/home/witek/opt/libsbml2.3.4/include
>>> -I/home/witek/opt/libsbml2.3.4/include/sbml
>>> -I/home/witek/opt/libsbml2.3.4/include
>>> -I/home/witek/opt/libsbml2.3.4/include/sbml/sbml -I.     -MT
>>> odeModel.o -MD -MP -MF ".deps/odeModel.Tpo" -c -o odeModel.o
>>> odeModel.c; \
>>>        then mv -f ".deps/odeModel.Tpo" ".deps/odeModel.Po";
>> else rm -f
>>> ".deps/odeModel.Tpo"; exit 1; fi
>>> odeModel.c: In function 'ODEModel_computeAssignmentRuleSets':
>>> odeModel.c:417: warning: passing argument 1 of 'ASTNode_getSymbols'
>>> discards qualifiers from pointer target type
>>> odeModel.c:424: warning: passing argument 1 of 'ASTNode_getSymbols'
>>> discards qualifiers from pointer target type
>>> odeModel.c:426: warning: passing argument 2 of 'List_add' discards
>>> qualifiers from pointer target type
>>> odeModel.c: In function 'ODEModel_createFromFileWithObservables':
>>> odeModel.c:744: warning: passing argument 1 of 'parseModel'
>> discards
>>> qualifiers from pointer target type if gcc -DHAVE_CONFIG_H -I. -I.
>>> -I../src/sbmlsolver -I/home/witek/opt/sundials/include
>>> -I/home/witek/opt/libsbml2.3.4/include
>>> -I/home/witek/opt/libsbml2.3.4/include/sbml
>>> -I/home/witek/opt/libsbml2.3.4/include
>>> -I/home/witek/opt/libsbml2.3.4/include/sbml/sbml -I.     -MT
>>> odeSolver.o -MD -MP -MF ".deps/odeSolver.Tpo" -c -o odeSolver.o
>>> odeSolver.c; \
>>>        then mv -f ".deps/odeSolver.Tpo"
>> ".deps/odeSolver.Po"; else rm
>>> -f ".deps/odeSolver.Tpo"; exit 1; fi if gcc -DHAVE_CONFIG_H -I. -I.
>>> -I../src/sbmlsolver -I/home/witek/opt/sundials/include
>>> -I/home/witek/opt/libsbml2.3.4/include
>>> -I/home/witek/opt/libsbml2.3.4/include/sbml
>>> -I/home/witek/opt/libsbml2.3.4/include
>>> -I/home/witek/opt/libsbml2.3.4/include/sbml/sbml -I.     -MT
>>> processAST.o -MD -MP -MF ".deps/processAST.Tpo" -c -o processAST.o
>>> processAST.c; \
>>>        then mv -f ".deps/processAST.Tpo"
>> ".deps/processAST.Po"; else
>>> rm -f ".deps/processAST.Tpo"; exit 1; fi
>>> processAST.c:69: error: static declaration of 'acosh' follows
>>> non-static declaration
>>> processAST.c:74: error: static declaration of 'asinh' follows
>>> non-static declaration
>>> processAST.c:79: error: static declaration of 'atanh' follows
>>> non-static declaration
>>> make[1]: *** [processAST.o] Error 1
>>> make[1]: Leaving directory
>>> `/home/witek/devel/cpp/odesolver/sos3/SBML_odeSolver/src'
>>> make: *** [all-recursive] Error 1
>>>
>>>
>>> Any suggestions
>>>
>>> Eryk
>>>
>>>
>>>
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