Re: [SOSlib-devel] more fun on AIX

[Christoph F. <xt...@tb...>]

hi andrew,

yes this seems to be the problem.
you can look into the autogen.sh script in the source of ODE_solver
the right order is

aclocal -I config
autoheader
automake --add-missing --gnu --copy

=;) xtof

Andrew Finney writes:
 > xtof
 > 
 > Thanks for your help
 > 
 > I think I have buggered up the configuration process.
 > what is the correct set of commands to setup a configuration from
 > scratch (i.e. generate all the configure and Makefile.in files) assuming
 > a valid set of config and Makefile.am files?  I'm not a UNIX guru
 > 
 > I have automake 1.9.6 and autoconf 2.59
 > 
 > (I had to download and build my own copies as
 > the system ones were too old for libSBML)
 > 
 > I suspect that the lack of macro expansion in the makefile is causing
 > the g++ error :-(
 > 
 > yours Andrew
 > 
 > > -----Original Message-----
 > > From: Christoph Flamm [mailto:xt...@tb...] 
 > > Sent: 09 June 2006 15:58
 > > To: Andrew Finney
 > > Cc: SOSlib Development
 > > Subject: Re: [SOSlib-devel] more fun on AIX[Scanned]
 > > 
 > > hi andrew,
 > > 
 > > g++ (GCC) 3.3.2 is rather old, the current version is g++ (GCC) 4.0.2
 > > which should be available for AIX.
 > > 
 > > you still have problems with the automake/autoconf/configure 
 > > process; your configure script has not properly substituted 
 > > the @WHATEVER@ variables from the Makefile.in with the values 
 > > determined by the configure script!
 > > 
 > > which version of automake/autoconf are you using?
 > > the current one's are:
 > > automake (GNU automake) 1.9.5
 > > autoconf (GNU Autoconf) 2.59
 > > 
 > > =;) xtof
 > > 
 > > Andrew Finney writes:
 > >  > Rainer
 > >  >
 > >  > trying to get SOS lib to compile on AIX has been  > one 
 > > long hack and I have not got there yet...
 > >  >
 > >  > first:
 > >  >
 > >  > - I couldn't get xerces to link with libSBML
 > >  >    so I'm using expat 
 > >  > 
 > >  > 	so I replaced xerces-c with expat as you described
 > >  >
 > >  > - I removed -Wl,-rpath from sbml.m4
 > >  > 
 > >  > 	not supported
 > >  >
 > >  > - I added libstdc++ and libm to sbml.m4  > 
 > >  > 	not there by default
 > >  >
 > >  > - one of the makefile.in was missing which required
 > >  > 	the following:
 > >  > 
 > >  > 	touch src/sbmlsolver/config.h.in
 > >  > 	aclocal
 > >  > 	autoconf
 > >  > 	automake --all-missing
 > >  >
 > >  > The above enabled me to complete ./configure  >  > However 
 > > when I run gmake at the top level I get:
 > >  >
 > >  > ----------------------------------------
 > >  >
 > >  > bash-2.05a$ gmake
 > >  > Making all in src
 > >  >         if g++ -DHAVE_CONFIG_H -I. -I. -I../src/sbmlsolver
 > >  > @SUNDIALS_CFLAGS@  @G
 > >  > RAPHVIZ_CFLAGS@  @SBML_CFLAGS@  @GRACE_CFLAGS@  -I.     -g -O2 -MT
 > >  > ASTIndexNameN
 > >  > ode.o -MD -MP -MF ".deps/ASTIndexNameNode.Tpo" -c -o 
 > > ASTIndexNameNode.o  > ASTIndex  > NameNode.cpp;  then mv -f 
 > > ".deps/ASTIndexNameNode.Tpo"
 > >  > ".deps/ASTIndexNameNode.P
 > >  > o"; else rm -f ".deps/ASTIndexNameNode.Tpo"; exit 1; fi  > 
 > > g++: cannot specify -o with -c or -S and multiple 
 > > compilations  > make: 1254-004 The error code from the last 
 > > command is 1.
 > >  >
 > >  >
 > >  > Stop.
 > >  > gmake: *** [all-recursive] Error 1
 > >  > bash-2.05a$ g++ --version
 > >  > g++ (GCC) 3.3.2
 > >  > Copyright (C) 2003 Free Software Foundation, Inc.
 > >  > This is free software; see the source for copying 
 > > conditions.  There is  > NO  > warranty; not even for 
 > > MERCHANTABILITY or FITNESS FOR A PARTICULAR  > PURPOSE.
 > >  >
 > >  > -----------------------------
 > >  >
 > >  > Is the version of g++ I'm using too old?
 > >  > Is this make output correct?
 > >  >
 > >  > Any ideas would be most helpful
 > >  >
 > >  > yours Andrew
 > >  >
 > >  >
 > >  >
 > >  > _______________________________________________
 > >  > sbmlsolver-devel mailing list
 > >  > sbm...@li...
 > >  > https://lists.sourceforge.net/lists/listinfo/sbmlsolver-devel
 > > 
 > > --
 > > Christoph Flamm
 > > Bioinformatik, Inst.f.Informatik, Univ.Leipzig, Germany
 > >   www: http://www.tbi.univie.ac.at/~xtof
 > > phone: ++49 341 97-16688 fax: ++49 341 97-16709
 > > email: xt...@bi...
 > > smail: Haertelstrasse 16-18, D-04107 Leipzig, Germany
 > > 

-- 
Christoph Flamm
Bioinformatik, Inst.f.Informatik, Univ.Leipzig, Germany
  www: http://www.tbi.univie.ac.at/~xtof
phone: ++49 341 97-16688 fax: ++49 341 97-16709
email: xt...@bi...
smail: Haertelstrasse 16-18, D-04107 Leipzig, Germany