Re: [SOSlib-devel] more fun on AIX

[Andrew F. <af...@ph...>]

xtof

Thanks for your help

I think I have buggered up the configuration process.
what is the correct set of commands to setup a configuration from
scratch (i.e. generate all the configure and Makefile.in files) assuming
a valid set of config and Makefile.am files?  I'm not a UNIX guru

I have automake 1.9.6 and autoconf 2.59

(I had to download and build my own copies as
the system ones were too old for libSBML)

I suspect that the lack of macro expansion in the makefile is causing
the g++ error :-(

yours Andrew

> -----Original Message-----
> From: Christoph Flamm [mailto:xt...@tb...]=20
> Sent: 09 June 2006 15:58
> To: Andrew Finney
> Cc: SOSlib Development
> Subject: Re: [SOSlib-devel] more fun on AIX[Scanned]
>=20
> hi andrew,
>=20
> g++ (GCC) 3.3.2 is rather old, the current version is g++ (GCC) 4.0.2
> which should be available for AIX.
>=20
> you still have problems with the automake/autoconf/configure=20
> process; your configure script has not properly substituted=20
> the @WHATEVER@ variables from the Makefile.in with the values=20
> determined by the configure script!
>=20
> which version of automake/autoconf are you using?
> the current one's are:
> automake (GNU automake) 1.9.5
> autoconf (GNU Autoconf) 2.59
>=20
> =3D;) xtof
>=20
> Andrew Finney writes:
>  > Rainer
>  >
>  > trying to get SOS lib to compile on AIX has been  > one=20
> long hack and I have not got there yet...
>  >
>  > first:
>  >
>  > - I couldn't get xerces to link with libSBML
>  >    so I'm using expat=20
>  >=20
>  > 	so I replaced xerces-c with expat as you described
>  >
>  > - I removed -Wl,-rpath from sbml.m4
>  >=20
>  > 	not supported
>  >
>  > - I added libstdc++ and libm to sbml.m4  >=20
>  > 	not there by default
>  >
>  > - one of the makefile.in was missing which required
>  > 	the following:
>  >=20
>  > 	touch src/sbmlsolver/config.h.in
>  > 	aclocal
>  > 	autoconf
>  > 	automake --all-missing
>  >
>  > The above enabled me to complete ./configure  >  > However=20
> when I run gmake at the top level I get:
>  >
>  > ----------------------------------------
>  >
>  > bash-2.05a$ gmake
>  > Making all in src
>  >         if g++ -DHAVE_CONFIG_H -I. -I. -I../src/sbmlsolver
>  > @SUNDIALS_CFLAGS@  @G
>  > RAPHVIZ_CFLAGS@  @SBML_CFLAGS@  @GRACE_CFLAGS@  -I.     -g -O2 -MT
>  > ASTIndexNameN
>  > ode.o -MD -MP -MF ".deps/ASTIndexNameNode.Tpo" -c -o=20
> ASTIndexNameNode.o  > ASTIndex  > NameNode.cpp;  then mv -f=20
> ".deps/ASTIndexNameNode.Tpo"
>  > ".deps/ASTIndexNameNode.P
>  > o"; else rm -f ".deps/ASTIndexNameNode.Tpo"; exit 1; fi  >=20
> g++: cannot specify -o with -c or -S and multiple=20
> compilations  > make: 1254-004 The error code from the last=20
> command is 1.
>  >
>  >
>  > Stop.
>  > gmake: *** [all-recursive] Error 1
>  > bash-2.05a$ g++ --version
>  > g++ (GCC) 3.3.2
>  > Copyright (C) 2003 Free Software Foundation, Inc.
>  > This is free software; see the source for copying=20
> conditions.  There is  > NO  > warranty; not even for=20
> MERCHANTABILITY or FITNESS FOR A PARTICULAR  > PURPOSE.
>  >
>  > -----------------------------
>  >
>  > Is the version of g++ I'm using too old?
>  > Is this make output correct?
>  >
>  > Any ideas would be most helpful
>  >
>  > yours Andrew
>  >
>  >
>  >
>  > _______________________________________________
>  > sbmlsolver-devel mailing list
>  > sbm...@li...
>  > https://lists.sourceforge.net/lists/listinfo/sbmlsolver-devel
>=20
> --
> Christoph Flamm
> Bioinformatik, Inst.f.Informatik, Univ.Leipzig, Germany
>   www: http://www.tbi.univie.ac.at/~xtof
> phone: ++49 341 97-16688 fax: ++49 341 97-16709
> email: xt...@bi...
> smail: Haertelstrasse 16-18, D-04107 Leipzig, Germany
>=20