Re: [SOSlib-devel] building SBML ODE Solver for AIX - can Iuse expat?[Scanned]

[Andrew F. <af...@ph...>]

Akira

you were right.  I removed the rpath option and got gcc to run however
I now have a whole load of undefined symbols that seems to be form the
standard template library. =20

Is there any obvious STL or runtime libraries I might be missing?

yours Andrew

> -----Original Message-----
> From: sbm...@li...=20
> [mailto:sbm...@li...] On=20
> Behalf Of Akira Funahashi
> Sent: 08 June 2006 15:39
> To: Andrew Finney
> Cc: sbm...@li...
> Subject: Re: [SOSlib-devel] building SBML ODE Solver for AIX=20
> - can Iuse expat?[Scanned]
>=20
> Hi,=20
>=20
> At Thu, 8 Jun 2006 15:20:05 +0100,
> "Andrew Finney" <af...@ph...> wrote:
> > configure:4220: result: no:
> >                    CFLAGS=3D-g -O2=20
> -I/hpc/home/finneya/programs/include
> >                    LDFLAGS=3D=20
> -Wl,-rpath,/hpc/home/finneya/programs/lib
> > -L/hpc/home/finneya/programs/lib
> >                    LIBS=3D -lexpat -lsbml
> > configure:4228: error: Can not link to SBML Library:
> > 		  Please, make sure to use libSBML version >=3D 2.3.2
> >=20
> > ------------------
> >=20
> > It looks as if the loader (ld) isn't performing as expected :-(
> >=20
> > what's the -rpath supposed to do?
>=20
> "-Wl,-rpath" is used to specify the library path which is=20
> used by the compiled binary at runtime.
>=20
> On the other hand, "-L" is used to specify the library path=20
> which is used at its compile.
>=20
> For example, if you compile a binary as follows:
>=20
>   gcc -L/home/funa/ -lsbml -Wl,-rpath=3D/usr/local/lib
>=20
> the gcc will try to find libsbml in /home/funa at the=20
> compile, and the compiled binary/library will look for=20
> libsbml in /usr/local/lib at its execution.
>=20
> Some platform doesn't support "-Wl,-rpath" option. It depends=20
> on the version of gcc or ld (correct me if I'm wrong).
> So try removing -Wl,-rpath in the configure script.
>=20
> Hope this helps,
> --
> Akira Funahashi, Ph.D. | Kitano Symbiotic Systems Project,=20
> [fu...@sy...]| ERATO-SORST, JST
>=20
>=20
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>=20