Re: [SOSlib-devel] building SBML ODE Solver for AIX - can I use expat?[Scanned]

[Andrew F. <af...@ph...>]

This is a not so recent version of 1.6.0=20

Andrew
> -----Original Message-----
> From: Rainer Machne [mailto:ra...@tb...]=20
> Sent: 08 June 2006 15:25
> To: Andrew Finney; Christoph Flamm
> Cc: SOSlib Development
> Subject: Re: [SOSlib-devel] building SBML ODE Solver for AIX=20
> - can I use expat?[Scanned]
>=20
>=20
> >
> > It looks as if the loader (ld) isn't performing as expected :-(
> >
> > what's the -rpath supposed to do?
>=20
>=20
> Maybe Xtof can help out here.
>=20
> Just a short question: are you trying to compile version=20
> 1.5.0 or is there an old version number hidden somewhere in=20
> the configure process?
>=20
> Rainer
>=20
> On Thu, 8 Jun 2006, Andrew Finney wrote:
>=20
> > Rainer
> >
> > I managed to substitute expat for xerces
> >
> > But I still can't link to libsbml in the config.log
> > (attached)
> > I get the following:
> >
> > ---------------------------------
> >
> > configure:4155: checking correct functioning of SBML
> > configure:4185: gcc -o conftest -g -O2=20
> > -I/hpc/home/finneya/programs/include
> > -Wl,-rpath,/hpc/home/finneya/programs/lib
> > -L/hpc/home/finneya/programs/lib conftest.c  -lexpat -lsbml >&5
> > ld: 0706-012 The -p flag is not recognized.
> > ld: 0706-012 The -a flag is not recognized.
> > ld: 0706-012 The -t flag is not recognized.
> > ld: 0706-012 The -h flag is not recognized.
> > collect2: ld returned 255 exit status
> > configure:4191: $? =3D 1
> > configure: failed program was:
> > | /* confdefs.h.  */
> > |
> > | #define PACKAGE_NAME "odeSolver"
> > | #define PACKAGE_TARNAME "SBML_odeSolver"
> > | #define PACKAGE_VERSION "1.5.0"
> > | #define PACKAGE_STRING "odeSolver 1.5.0"
> > | #define PACKAGE_BUGREPORT "{raim,xtof}@tbi.univie.ac.at"
> > | #define PACKAGE "SBML_odeSolver"
> > | #define VERSION "1.5.0"
> > | #ifdef __cplusplus
> > | extern "C" void std::exit (int) throw (); using std::exit; #endif
> > | /* end confdefs.h.  */
> > | #include <sbml/SBMLTypes.h>
> > | int
> > | main ()
> > | {
> > | SBMLReader_t *sr; sr =3D SBMLReader_create(); SBMLReader_free(sr);
> > |   ;
> > |   return 0;
> > | }
> > configure:4220: result: no:
> >                   CFLAGS=3D-g -O2 =
-I/hpc/home/finneya/programs/include
> >                   LDFLAGS=3D =
-Wl,-rpath,/hpc/home/finneya/programs/lib
> > -L/hpc/home/finneya/programs/lib
> >                   LIBS=3D -lexpat -lsbml
> > configure:4228: error: Can not link to SBML Library:
> > 		  Please, make sure to use libSBML version >=3D 2.3.2
> >
> > ------------------
> >
> > It looks as if the loader (ld) isn't performing as expected :-(
> >
> > what's the -rpath supposed to do?
> >
> > yours Andrew
> >
> >
> >> -----Original Message-----
> >> From: Rainer Machne [mailto:ra...@tb...]
> >> Sent: 08 June 2006 14:13
> >> To: Andrew Finney
> >> Cc: SOSlib Development
> >> Subject: Re: building SBML ODE Solver for AIX - can I use=20
> >> expat?[Scanned]
> >>
> >> Hi Andrew
> >>
> >> Unfortunately we completely forgot about libSBML with expat.
> >>
> >> There is a bug report in sourceforge with short instructions.
> >> http://sourceforge.net/tracker/index.php?func=3Ddetail&aid=3D14204
> >> 89&group_id=3D139893&atid=3D744811
> >>
> >>
> >> Copied from there, with slight corrections:
> >>
> >> This bug can temporarily be solved simply by replacing all=20
> occurences=20
> >> of
> >>
> >> `-lxerces-c'
> >>
> >> in the files:
> >>
> >> configure
> >> src/Makefile.am
> >> src/Makefile.in
> >> examples/Makefile.am
> >> examples/Makefile.in
> >> odeSolver/Makefile.am
> >> odeSolver/Makefile.in
> >>
> >> with `-lexpat'
> >>
> >> e.g. by usind sed:
> >>
> >> sed 's/xerces-c/expat/g' configure >configure.new mv configure.new=20
> >> configure
> >>
> >> for all above files.
> >>
> >>
> >> I tried it once and it worked! Please let me know if you suceed!
> >>
> >> Rainer
> >>
> >>
> >>
> >> On Thu, 8 Jun 2006, Andrew Finney wrote:
> >>
> >>> Rainer
> >>>
> >>> I'm trying to build SOS on AIX
> >>>
> >>> for some reason I'm having problems linking with xerces for that=20
> >>> platform
> >>>
> >>> Is there a way to configure SOS to use expat?
> >>>
> >>> Andrew
> >>>
> >>
> >
>=20