Re: [SOSlib-devel] building SBML ODE Solver for AIX - can I use expat?[Scanned]

[Rainer M. <ra...@tb...>]

>
> It looks as if the loader (ld) isn't performing as expected :-(
>
> what's the -rpath supposed to do?


Maybe Xtof can help out here.

Just a short question: are you trying to compile version 1.5.0 or is there 
an old version number hidden somewhere in the configure process?

Rainer

On Thu, 8 Jun 2006, Andrew Finney wrote:

> Rainer
>
> I managed to substitute expat for xerces
>
> But I still can't link to libsbml in the config.log
> (attached)
> I get the following:
>
> ---------------------------------
>
> configure:4155: checking correct functioning of SBML
> configure:4185: gcc -o conftest -g -O2
> -I/hpc/home/finneya/programs/include
> -Wl,-rpath,/hpc/home/finneya/programs/lib
> -L/hpc/home/finneya/programs/lib conftest.c  -lexpat -lsbml >&5
> ld: 0706-012 The -p flag is not recognized.
> ld: 0706-012 The -a flag is not recognized.
> ld: 0706-012 The -t flag is not recognized.
> ld: 0706-012 The -h flag is not recognized.
> collect2: ld returned 255 exit status
> configure:4191: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> |
> | #define PACKAGE_NAME "odeSolver"
> | #define PACKAGE_TARNAME "SBML_odeSolver"
> | #define PACKAGE_VERSION "1.5.0"
> | #define PACKAGE_STRING "odeSolver 1.5.0"
> | #define PACKAGE_BUGREPORT "{raim,xtof}@tbi.univie.ac.at"
> | #define PACKAGE "SBML_odeSolver"
> | #define VERSION "1.5.0"
> | #ifdef __cplusplus
> | extern "C" void std::exit (int) throw (); using std::exit;
> | #endif
> | /* end confdefs.h.  */
> | #include <sbml/SBMLTypes.h>
> | int
> | main ()
> | {
> | SBMLReader_t *sr; sr = SBMLReader_create(); SBMLReader_free(sr);
> |   ;
> |   return 0;
> | }
> configure:4220: result: no:
>                   CFLAGS=-g -O2 -I/hpc/home/finneya/programs/include
>                   LDFLAGS= -Wl,-rpath,/hpc/home/finneya/programs/lib
> -L/hpc/home/finneya/programs/lib
>                   LIBS= -lexpat -lsbml
> configure:4228: error: Can not link to SBML Library:
> 		  Please, make sure to use libSBML version >= 2.3.2
>
> ------------------
>
> It looks as if the loader (ld) isn't performing as expected :-(
>
> what's the -rpath supposed to do?
>
> yours Andrew
>
>
>> -----Original Message-----
>> From: Rainer Machne [mailto:ra...@tb...]
>> Sent: 08 June 2006 14:13
>> To: Andrew Finney
>> Cc: SOSlib Development
>> Subject: Re: building SBML ODE Solver for AIX - can I use
>> expat?[Scanned]
>>
>> Hi Andrew
>>
>> Unfortunately we completely forgot about libSBML with expat.
>>
>> There is a bug report in sourceforge with short instructions.
>> http://sourceforge.net/tracker/index.php?func=detail&aid=14204
>> 89&group_id=139893&atid=744811
>>
>>
>> Copied from there, with slight corrections:
>>
>> This bug can temporarily be solved simply by replacing all
>> occurences of
>>
>> `-lxerces-c'
>>
>> in the files:
>>
>> configure
>> src/Makefile.am
>> src/Makefile.in
>> examples/Makefile.am
>> examples/Makefile.in
>> odeSolver/Makefile.am
>> odeSolver/Makefile.in
>>
>> with `-lexpat'
>>
>> e.g. by usind sed:
>>
>> sed 's/xerces-c/expat/g' configure >configure.new mv
>> configure.new configure
>>
>> for all above files.
>>
>>
>> I tried it once and it worked! Please let me know if you suceed!
>>
>> Rainer
>>
>>
>>
>> On Thu, 8 Jun 2006, Andrew Finney wrote:
>>
>>> Rainer
>>>
>>> I'm trying to build SOS on AIX
>>>
>>> for some reason I'm having problems linking with xerces for that
>>> platform
>>>
>>> Is there a way to configure SOS to use expat?
>>>
>>> Andrew
>>>
>>
>