Re: [SOSlib-devel] building SBML ODE Solver for AIX - can I use expat?[Scanned]

[Andrew F. <af...@ph...>]

Rainer

I managed to substitute expat for xerces

But I still can't link to libsbml in the config.log
(attached)
I get the following:

---------------------------------

configure:4155: checking correct functioning of SBML
configure:4185: gcc -o conftest -g -O2
-I/hpc/home/finneya/programs/include
-Wl,-rpath,/hpc/home/finneya/programs/lib
-L/hpc/home/finneya/programs/lib conftest.c  -lexpat -lsbml >&5
ld: 0706-012 The -p flag is not recognized.
ld: 0706-012 The -a flag is not recognized.
ld: 0706-012 The -t flag is not recognized.
ld: 0706-012 The -h flag is not recognized.
collect2: ld returned 255 exit status
configure:4191: $? =3D 1
configure: failed program was:
| /* confdefs.h.  */
|=20
| #define PACKAGE_NAME "odeSolver"
| #define PACKAGE_TARNAME "SBML_odeSolver"
| #define PACKAGE_VERSION "1.5.0"
| #define PACKAGE_STRING "odeSolver 1.5.0"
| #define PACKAGE_BUGREPORT "{raim,xtof}@tbi.univie.ac.at"
| #define PACKAGE "SBML_odeSolver"
| #define VERSION "1.5.0"
| #ifdef __cplusplus
| extern "C" void std::exit (int) throw (); using std::exit;
| #endif
| /* end confdefs.h.  */
| #include <sbml/SBMLTypes.h>
| int
| main ()
| {
| SBMLReader_t *sr; sr =3D SBMLReader_create(); SBMLReader_free(sr);
|   ;
|   return 0;
| }
configure:4220: result: no:
                   CFLAGS=3D-g -O2 -I/hpc/home/finneya/programs/include
                   LDFLAGS=3D -Wl,-rpath,/hpc/home/finneya/programs/lib
-L/hpc/home/finneya/programs/lib
                   LIBS=3D -lexpat -lsbml
configure:4228: error: Can not link to SBML Library:
		  Please, make sure to use libSBML version >=3D 2.3.2

------------------

It looks as if the loader (ld) isn't performing as expected :-(

what's the -rpath supposed to do?

yours Andrew
=20

> -----Original Message-----
> From: Rainer Machne [mailto:ra...@tb...]=20
> Sent: 08 June 2006 14:13
> To: Andrew Finney
> Cc: SOSlib Development
> Subject: Re: building SBML ODE Solver for AIX - can I use=20
> expat?[Scanned]
>=20
> Hi Andrew
>=20
> Unfortunately we completely forgot about libSBML with expat.
>=20
> There is a bug report in sourceforge with short instructions.
> http://sourceforge.net/tracker/index.php?func=3Ddetail&aid=3D14204
> 89&group_id=3D139893&atid=3D744811
>=20
>=20
> Copied from there, with slight corrections:
>=20
> This bug can temporarily be solved simply by replacing all=20
> occurences of
>=20
> `-lxerces-c'
>=20
> in the files:
>=20
> configure
> src/Makefile.am
> src/Makefile.in
> examples/Makefile.am
> examples/Makefile.in
> odeSolver/Makefile.am
> odeSolver/Makefile.in
>=20
> with `-lexpat'
>=20
> e.g. by usind sed:
>=20
> sed 's/xerces-c/expat/g' configure >configure.new mv=20
> configure.new configure
>=20
> for all above files.
>=20
>=20
> I tried it once and it worked! Please let me know if you suceed!
>=20
> Rainer
>=20
>=20
>=20
> On Thu, 8 Jun 2006, Andrew Finney wrote:
>=20
> > Rainer
> >
> > I'm trying to build SOS on AIX
> >
> > for some reason I'm having problems linking with xerces for that=20
> > platform
> >
> > Is there a way to configure SOS to use expat?
> >
> > Andrew
> >
>=20