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#1 Errors in SBML2LaTeX

1.0
open
nobody
Bug (1)
2015-02-22
2015-02-22
No
  1. Notes are not displayed. (But they are in the PDF version obtained directly from BioModels.)

  2. Equations are displayed differently by the SBML2Latex versions I can access compared to the one the BioModels repository appears to use. (The "Derived Rate Equations" are displayed much better by the version that BioModels is using.)

I've noticed a number of other things that SBML2Latex doesn't do quite right;

  1. InitialAssignments give the equation, units etc. but not the Symbol the value is actually being assigned to;
    7.1 Initialassignment 1
    SBO:0000064 mathematical expression
    Notes
    Derived unit l
    Math VTotal _ VArt fraction VTotal

  2. For species, the flag "HasOnlySubstanceUnits" doesn't appear to be shown anywhere in the Latex output.

  3. Quantities that are set by an IntialAssignment aren't shown as such. For example, a compartment volume assigned via an InitialAssignemnt isn't listed as having the correct volume.

Discussion


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