Hi Jacob,
Sorry, I meant to create a new thread for iBioSim related questions only.
SBML questions should be asked here. It is still quite helpful to ask
questions in the arrays mailing list to get opinions from other people.
Also, Lucian, SBML Team, editors, etc are more experienced than me so they
can explain something that I wasn't very clear or correct me if I am wrong,
so it is still quite helpful to keep them in the loop.
Leandro
On Sat, May 27, 2017 at 9:50 AM, Jacob Barhak <jac...@gm...>
wrote:
> So Lucian,
>
> What you are pointing out may be exactly what I need.
>
> I need events that use the same instruction line which is in the trigger
> to fire in random order. The randomness is important since it allows
> situations where a person has an MI before a Stroke or a Stroke before an
> MI where both events have their own probability.
>
> I was hoping to handle it later on by assigning priority a random number -
> for now it is not that important - and for debug purposes, I need something
> I can follow - the code is convoluted enough.
>
> By the way, do you want to be in the discussion where I send code to
> Leandro? You were very helpful so far.
>
> Yet you have a good point that we will revisit - please remember it and
> raise it again in a few weeks. It will help me remember.
>
> Jacob
>
>
>
> On Sat, May 27, 2017 at 10:45 AM, Jacob Barhak <jac...@gm...>
> wrote:
>
>> So Lucian,
>>
>> Leandro, asked to discontinue the old thread due to length, so I am
>> creating a new thread with new title .
>>
>>
>>
>> Jacob
>>
>> On Fri, May 26, 2017 at 3:19 PM, Lucian Smith <luc...@gm...>
>> wrote:
>>
>>> One note:
>>>
>>> On Thu, May 25, 2017 at 1:03 PM, Leandro Watanabe <lea...@gm...>
>>> wrote:
>>>
>>>> If you leave priority out, then it is equal probability (50 50 in this
>>>> case) of firing each.
>>>>
>>>
>>> This is not true: in the absence of priorities, simulators may use any
>>> method they wish to determine which event fires first. Some use 'the order
>>> the event appears in the document', so would always fire event E1 before
>>> event E2. In order to ensure a 50:50 probability, the 'priority' attribute
>>> must exist, and be the same for both events.
>>>
>>> This means that your example, where both priorities are draws from the
>>> same distribution, is functionally equivalent to giving both priorities the
>>> same value, which is probably simplest.
>>>
>>> If you want one event to preferentially fire, you can give them
>>> different distributions. As an example:
>>>
>>> E1 priority: uniform(0,1)
>>> E2 priority: uniform(0,2)
>>>
>>> will preferentially execute event E2 75% of the time, as a draw from
>>> uniform(0,2) will be greater than a draw from uniform(0,1) 75% of the time.
>>>
>>> -Lucian
>>>
>>
>>
>
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