#10 prodigal run failed

[Zhenjian Lin]

[u0676503@frisco8 output1]$ singularity exec --nv docker://990210oliver/mycc.docker MyCC.py 135Lcontigs.fasta.hi_code_filtered.fasta -a cov.list -meta
INFO: Converting OCI blobs to SIF format
INFO: Starting build...
Getting image source signatures
Copying blob sha256:e190868d63f8f8b85b026e53b5724c3c2a4548e1d642953442559cfa5f79b2c9
62.72 MiB / 62.72 MiB [====================================================] 3s
Copying blob sha256:909cd34c6fd77d398af1d93e9d4f7f76104903f237be3d4db7b345a19631f291
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Copying blob sha256:0b9bfabab7c119abe303f22a146ff78be4ab0abdc798b0a0e97e94e80238a7e8
682 B / 682 B [============================================================] 0s
Copying blob sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
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Copying blob sha256:c07cd15d77f2afce4a4cc7719547d559865b94a9fd91ce4de66505a4a474ac1e
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Copying blob sha256:3481689017ab37ba559816eecc1261261fe19d664391c68d80d190297e78c9f0
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Copying blob sha256:39eb7f1d518d445a05ef320991d3c883a9203ea92c86eb2898b045954ad3214f
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Copying blob sha256:ebbba70a3622a679b092089349962dbe267029e868b659e16cf991dc3c76e4a1
4.54 MiB / 4.54 MiB [======================================================] 0s
Copying blob sha256:f552ac6c235092ca4f9246bc64193ce68ecdd685f4a5ad185bf052b6ac9a9647
100.31 MiB / 100.31 MiB [==================================================] 6s
Skipping fetch of repeat blob sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Copying blob sha256:2e3ef29851a689aba690131f0a5e980bc45964bcd58286d0a243bd9e3b4d4329
22.94 MiB / 22.94 MiB [====================================================] 2s
Skipping fetch of repeat blob sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Copying blob sha256:972719a65c60d19fe17c64b6549d1a3dd4bfc9d271ba50759749caf845121b34
24.00 MiB / 24.00 MiB [====================================================] 1s
Skipping fetch of repeat blob sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Copying blob sha256:915fbf255bd4d3871ff611c80b7f9ef5bc84ab2c123430147410ce0ddc48096a
712.18 KiB / 712.18 KiB [==================================================] 0s
Skipping fetch of repeat blob sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Skipping fetch of repeat blob sha256:a3ed95caeb02ffe68cdd9fd84406680ae93d633cb16422d00e8a7c22955b46d4
Copying config sha256:287f4255d45d0ef85ecaa24fe99ceb85667dcb71bc27dca90bb24477fc62f737
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Writing manifest to image destination
Storing signatures
INFO: Creating SIF file...
INFO: Build complete: /uufs/chpc.utah.edu/common/home/u0676503/.singularity/cache/oci-tmp/0ce76ff1cf14b02648ea97ea6b871d9128c0ed2bdd30981670ee2479dbae428f/mycc.docker_latest.sif
INFO: Image cached as SIF at /uufs/chpc.utah.edu/common/home/u0676503/.singularity/cache/oci-tmp/0ce76ff1cf14b02648ea97ea6b871d9128c0ed2bdd30981670ee2479dbae428f/mycc.docker_latest.sif
20190718_1431
4mer
1_rename.py /scratch/kingspeak/serial/zlin/16134R/Fastq/spades/output1/135Lcontigs.fasta.hi_code_filtered.fasta 1000
Seqs >= 1000 : 10877
Minimum contig lengh for first stage clustering: 3470
run Prodigal.
prodigal -i My.fa -a gene.aa -d gene.nuc -f gbk -o output -s potential_genes.txt -p meta
run fetchMG.
Traceback (most recent call last):
File "/opt/MyCC.py", line 160, in <module>
os.chdir('output')
OSError: [Errno 2] No such file or directory: 'output'</module>