File	Date	Author	Commit
aligns	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
analysis	2016-03-17	Manfred Grabherr	[12ae47] Added file.
base	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
extern	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
samples	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
src	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
system	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
test	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
test_out	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
test_out2	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
tools	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
util	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
visual	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
xcorr_sample_synt	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
xcorr_sample_synt_light	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
xcorr_test	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
LICENSE	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
MakeDepend.cc	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_auto	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_cxx	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_deleta	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++_alpha	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++_i386	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++_i686	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++_i86pc	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++_ia64	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++_macosx	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_g++_x86_64	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_psc	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
Makefile_targets	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
README	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
out	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
out2	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
stQpk5CK	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
stWTTadu	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
test_Satsuma	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
test_SatsumaSynteny	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
tmp	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...
tmp.ps	2016-01-15	Manfred Grabherr	[a90fff] Commit after switch to git (man, sourceforge, y...

Read Me

Satsuma
Version 2.0, 2012/05/24

Program to align genomes

(c) 2012, Manfred Grabherr

Libraries distributed with this package under LGPL:
	Spines: (c) 2010, The Broad Institute

Publication: Grabherr, M. G., Russell, P., Meyer, M., Mauceli, E., 
Alföldi, J., Di Palma, F., & Lindblad-Toh, K. (2010). Genome-wide 
synteny through highly sensitive sequence alignment: Satsuma. 
Bioinformatics (Oxford, England), 26(9), 1145-51.

1. Legal
--------

This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.

This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
Lesser General Public License for more details.

You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA