SAT-Assembler

SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms.

Project Activity

See All Activity >

License

Creative Commons Attribution License

Follow SAT-Assembler

SAT-Assembler Web Site

Other Useful Business Software

Build on Google Cloud with $300 in Free Credit

New to Google Cloud? Get $300 in free credit to explore Compute Engine, BigQuery, Cloud Run, Vertex AI, and 150+ other products.

Start your next project with $300 in free Google Cloud credit. Spin up VMs, run containers, query exabytes in BigQuery, or build AI apps with Vertex AI and Gemini. Once your credits are used, keep building with 20+ products with free monthly usage, including Compute Engine, Cloud Storage, GKE, and Cloud Run functions. Sign up to start building right away.

Start Free Trial

Rate This Project

User Reviews

Be the first to post a review of SAT-Assembler!

Additional Project Details

Intended Audience

Information Technology

Programming Language

Python

Related Categories

Python Bio-Informatics Software

Registered

2013-10-15

Similar Business Software

Geneious

Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype...

See Software
SnapGene

Accurately design and simulate cloning procedures. Test complicated projects, catch errors before they happen, and obtain the right constructs the first time. Cloning is easier when you can see what you are doing. The intuitive interface offers you unparalleled visibility into your work,...

See Software
QIAGEN CLC Genomics Workbench

QIAGEN CLC Genomics Workbench is a powerful solution that works for everyone, no matter the workflow. Cutting-edge technology and unique features and algorithms widely used by scientific leaders in industry and academia make it easy to overcome challenges associated with data analysis....

See Software
Galaxy

Galaxy is an open source, web-based platform for data-intensive biomedical research. If you are new to Galaxy start here or consult our help resources. You can install your own Galaxy by following the tutorial and choosing from thousands of tools from the tool shed. This instance of Galaxy is...

See Software
Pluto

Since its founding in 2021 from the Wyss Institute at Harvard University, Pluto has become a trusted partner of life sciences organizations around the country ranging from biotech start-ups to public biopharma companies. Our cloud-based platform gives scientists the ability to manage all of...

See Software
Cufflinks

Cufflinks assemble transcripts, estimate their abundances and test for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these...

See Software