[Sashimi-commit] trans_proteomic_pipeline/src/common/ResidueMass ResidueMass.cxx, 1.19, 1.20

[eddes_js <edd...@us...>]

Update of /cvsroot/sashimi/trans_proteomic_pipeline/src/common/ResidueMass
In directory sc8-pr-cvs8.sourceforge.net:/tmp/cvs-serv6507/common/ResidueMass

Modified Files:
	ResidueMass.cxx 
Log Message:
Added defualt masses for one letter AA codes O, B and Z.


Index: ResidueMass.cxx
===================================================================
RCS file: /cvsroot/sashimi/trans_proteomic_pipeline/src/common/ResidueMass/ResidueMass.cxx,v
retrieving revision 1.19
retrieving revision 1.20
diff -C2 -d -r1.19 -r1.20
*** ResidueMass.cxx	6 Oct 2006 16:50:18 -0000	1.19
--- ResidueMass.cxx	27 Oct 2006 20:29:42 -0000	1.20
***************
*** 8,12 ****
  double ResidueMass::average_masses_[] = {
    (double) 71.0788, // A
!   (double) 0.0000, // B
    (double) 103.1388, // C
    (double) 115.0886, // D
--- 8,12 ----
  double ResidueMass::average_masses_[] = {
    (double) 71.0788, // A
!   (double) 114.5962, // B
    (double) 103.1388, // C
    (double) 115.0886, // D
***************
*** 21,25 ****
    (double) 131.1926, // M
    (double) 114.1038, // N
!   (double) 0.0000, // O
    (double) 97.1167, // P
    (double) 128.1307, // Q
--- 21,25 ----
    (double) 131.1926, // M
    (double) 114.1038, // N
!   (double) 114.1472, // O
    (double) 97.1167, // P
    (double) 128.1307, // Q
***************
*** 30,41 ****
    (double) 99.1326, // V
    (double) 186.2132, // W
!   (double) 0.0000, // X
    (double) 163.1760, //  Y
!   (double) 0.0000 // Z
  };
  
  double ResidueMass::monoisotopic_masses_[] = {
    (double) 71.03711, // A
!   (double) 0.0000, // B
    (double) 103.00919, // C
    (double) 115.02694, // D
--- 30,41 ----
    (double) 99.1326, // V
    (double) 186.2132, // W
!   (double) 113.1594, // X
    (double) 163.1760, //  Y
!   (double) 128.6231  // Z
  };
  
  double ResidueMass::monoisotopic_masses_[] = {
    (double) 71.03711, // A
!   (double) 114.53494, // B
    (double) 103.00919, // C
    (double) 115.02694, // D
***************
*** 50,54 ****
    (double) 131.04049, // M
    (double) 114.04293, // N
!   (double) 0.0000, // O
    (double) 97.05276, // P
    (double) 128.05858, // Q
--- 50,54 ----
    (double) 131.04049, // M
    (double) 114.04293, // N
!   (double) 114.07931, // O
    (double) 97.05276, // P
    (double) 128.05858, // Q
***************
*** 59,65 ****
    (double) 99.06841, // V
    (double) 186.07931, // W
!   (double) 0.0000, // X
    (double) 163.06333, //  Y
!   (double) 0.00000 // Z
  };
  /*
--- 59,65 ----
    (double) 99.06841, // V
    (double) 186.07931, // W
!   (double) 113.08406, // X
    (double) 163.06333, //  Y
!   (double) 128.55059 // Z
  };
  /*