samtools-help

[Samtools-help] Please Help!!! Install Samtools on Linux

[Mohamad Q. <maq...@gm...>]

Hi,

I tried to use Samtools on a Linux machine, but got stuck. Here is what i
did:

   1. Downloaded the tar file.
   2. Made a folder in my home directory call *samtools*.
   3. Unzipped the tar file in the newly created *samtools* folder.
   4. Tried to find what to do next for 2 hours, but couldn't find anything.


 Please point me in the right direction.


Thanks,
Mohamad

--

Re: [Samtools-help] Please Help!!! Install Samtools on Linux

[Davide C. <dav...@if...>]

On Oct 16, 2009, at 3:17 AM, Mohamad Qayoom wrote:

> Hi,
>
> I tried to use Samtools on a Linux machine, but got stuck. Here is  
> what i did:
> Downloaded the tar file.
> Made a folder in my home directory call samtools.
> Unzipped the tar file in the newly created samtools folder.
> Tried to find what to do next for 2 hours, but couldn't find anything.
>


Read the INSTALL file within the directory

d
/*
Davide Cittaro

Cogentech - Consortium for Genomic Technologies
via adamello, 16
20139 Milano
Italy

tel.: +39(02)574303007
e-mail: dav...@if...
*/

[Samtools-help] Fwd: Please Help!!! Install Samtools on Linux

[Mohamad Q. <maq...@gm...>]

Thanks, David.

The package doesn't have a INSTALL file in it.
It only has the following files/folders:
blast2sam.pl
bowtie2sam.pl
export2sam.pl
interpolate_sam.pl
maq2sam-long
maq2sam-short
md5fa
md5sum-lite
novo2sam.pl
psl2sam.pl
samtools
samtools.1
samtools.pl
samtools.txt
soam2sam.pl
wgsim
wgsim_eval.pl
zoom2sam.pl

Thanks,
Mohamad



On Fri, Oct 16, 2009 at 2:13 AM, Davide Cittaro <
dav...@if...> wrote:

>
>  On Oct 16, 2009, at 3:17 AM, Mohamad Qayoom wrote:
>
> Hi,
>
> I tried to use Samtools on a Linux machine, but got stuck. Here is what i
> did:
>
>    1. Downloaded the tar file.
>    2. Made a folder in my home directory call *samtools*.
>    3. Unzipped the tar file in the newly created *samtools* folder.
>    4. Tried to find what to do next for 2 hours, but couldn't find
>    anything.
>
>
>
>
> Read the INSTALL file within the directory
>
> d
>   /*
> Davide Cittaro
>
> Cogentech - Consortium for Genomic Technologies
> via adamello, 16
> 20139 Milano
> Italy
>
> tel.: +39(02)574303007
> e-mail: dav...@if...
> */
>
>
>
>


-- 
Mohamad Qayoom



-- 
Mohamad Qayoom