From: Peter Johansson <trojkan@gm...> - 2012-10-31 07:31:29
I wonder what the '-v' switch means for bcftools view. I call with
bcftool view -T trioauto -Nvg -
The manual says 'Output variant sites only' which I understands as no
output for sites that are all (3 samples) '0/0'. I'm asking because I
see no sites with '1/1' too and no sites with 0/1. I see no sites for
which all 3 samples get the same genotype called. Is that just a
coincidence for my data or is it on purpose by bcftools?