[Samtools-help] new user

[Christopher B. <cb...@gc...>]

Hi all,

I was hoping that someone could point me in the right direction for processing WGS data for phylogenetics and population genetics. I will soon have 10x whole genome data for about 27 individuals of a lizard species. I will need to go from raw reads to multiple sequence alignments and SNPs/genotypes. There is a reference genome available from a closely related species. Any guidance would be appreciated.


Chris





<{===================~~~~~~~~~~~
          /\                      /\
Christopher Blair, Ph.D.
Executive Officer, Biology PhD Program

Professor

Graduate Center and

New York City College of Technology
The City University of New York
cb...@ci...<mailto:cb...@gc...>; cb...@gc...<mailto:cb...@gc...>
Website: https://sites.google.com/site/christopherblairphd/home
Office: 4315 (GC); Academic Complex 501D (City Tech)
Lab: Academic Complex 401 (City Tech)