Re: [Samtools-help] consensus not recognized

[Leal, J. <jd...@he...>]

Thanks for your answer. Does it mean I need to install v1.16.1 instead of v1.2?

Joel
________________________________
From: Tom Blackwell <tb...@um...>
Sent: Wednesday, September 7, 2022 2:01 PM
To: Leal, Joel <jd...@he...>
Cc: sam...@li... <sam...@li...>
Subject: Re: [Samtools-help] consensus not recognized

Joel  -

I strongly suspect that the problem is "Which is the higher version number, samtools v1.16.1 or samtools v1.2 ?"  In this case it is v1.16.1.  Our sysadmins have had trouble with this too and have "updated" us back to version 1.2.

-  thanks  -  tom blackwell  -

On Wed, Sep 7, 2022 at 4:40 PM Leal, Joel via Samtools-help <sam...@li...<mailto:sam...@li...>> wrote:
Hi,

I am trying to generate a consensus sequence from a .BAM file using Samtools. I found it was developed for Samtools1.2. However, when calling the function consensus, it is not recognized. The function mpileup is recognized.

Could you tell me what is the issue, please?

Thanks,
Joel

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