[Samtools-help] Samtools collate - location of temporary files

[Keiran R. <kr...@sa...>]

Hi,

Just a quick query.  Where does samtools write the temporary files for the collate step?  Can I assume /tmp or the location defined by $TMPDIR?

Thanks,

Keiran Raine, M.Sc., MBCS
Principal Software Developer
Cancer, Ageing and Somatic Mutation
Wellcome Sanger Institute

kr...@sa...<mailto:kr...@sa...>
Office: D3-19
Ext: 4983

Please note that due to childcare requirements during the Covid lockdown I am generally not available after 4pm.



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