Re: [Samtools-help] mpileup on multi-sample bam file

[Heng Li <lh...@sa...>]

Only the BCF output groups samples. The text output does not.

Heng

On Dec 5, 2013, at 4:23 PM, "Gurp, Thomas van" <T.v...@ni...> wrote:

> Dear developers,
> 
> I’m confused as to why different samples in a bam file with a different RG and associated SM tag are not resulting in different columns in the mpileup output.
> See my description of the problem here:
> http://www.biostars.org/p/88323/
> 
> Any pointers would be welcome!
> 
> Cheers,
> Thomas
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