From: Jacob G. <jgr...@cl...> - 2012-05-29 08:29:29
|
Hi, I have implemented some import functionality that accepts SAM files with embedded, padded references. However, I cannot find any programs that output this kind of SAM files. I've been searching this mailing list and googled for things like "SAM embedded reference output". Furthermore, I have looked at a few assemblers like ABySS and Velvet, but either their latest release is before the SAM format change or their manuals do not mention this kind of output. So I'll be very grateful to hear of programs that already output SAM files with embedded references or will soon incorporate this functionality. Best regards, Jacob Grydholt Jensen Senior Developer, CLC bio |