From: Alec W. <al...@br...> - 2011-02-02 14:09:46
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Picard release 1.39 2 February 2011 - FastqToSam.java: Added options to set the sequencing center, PI, DS, DT tags in read group. - CollectGcBiasMetrics.java: Fixed a bug whereby windows from a reference sequence were ignored if the reference sequence had no reads aligned to it. - CollectGcBiasMetrics; When counting errors in GC window, add # of inserted bases and # of deleted bases to # of mismatched bases. - CommandLineParser.java: Eliminate requirement that fields annotated with @Option and @Usage be public. SourceForge appears to be partially functional now. I am not able to browse the SVN repository via HTTP, but other SVN operations seem to be working. -Alec |