[Samtools-help] Picard Release 1.33

[Alec W. <al...@br...>]

Picard release 1.33
19 October 2010


- Validate BAM index, if appropriate, in ValidateSamFile.

- In SamAlignmentMerger.java, added a check that the program record id handed in or present in the aligned BAM file is not already in use in the unmapped BAM.

- In SamAlignmentMerger.java, fix issue with program group being duplicated.

- In SamAlignmentMerger.java, added checks for duplicate read group and program group ids when call adding them in SAMFileHeader, modified SAMFileValidator to check for duplicates of these.

- Throw FileNotFoundException in IndexedFastaSequenceFile ctor if index is not found.


-Alec