[Samtools-help] export2sam.pl with paired-ends

[Wes B. <wes...@cs...>]

I have export files from Illumina that contain aligned paired-end data.
I can successfully convert this data (one file at a time) into SAM
format using the export2sam.pl script.  However, the pairing information
is not translated from the export files to the SAM files.  The
export2sam.pl script appears to want two export files to convert
paired-end data.  The export files from Illumina do not appear to
be in pairs.  Could someone explain how to preserve the pairing
information in a case like this?
-- 
Wes Barris <wes...@cs...>