Thread: [Saint-annotate-user] SF.net SVN: saint-annotate:[3] trunk
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From: <all...@us...> - 2009-06-09 14:19:11
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Revision: 3
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=3&view=rev
Author: allysonlister
Date: 2009-06-09 14:19:05 +0000 (Tue, 09 Jun 2009)
Log Message:
-----------
Updated POM to have as default the "fake" deployment directory. Added a new site menu that provides a logo and links to other docs as well as a running version of Saint.
Modified Paths:
--------------
trunk/pom.xml
Added Paths:
-----------
trunk/src/site/
trunk/src/site/resources/
trunk/src/site/resources/images/
trunk/src/site/resources/images/saint-logo250x96.png
trunk/src/site/site.xml
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From: <all...@us...> - 2009-07-23 14:59:12
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Revision: 10
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=10&view=rev
Author: allysonlister
Date: 2009-07-23 14:59:08 +0000 (Thu, 23 Jul 2009)
Log Message:
-----------
UniProtRecord now has a method for displaying just the description and not the description + accession. The ResultsRecord.mergeRecords() method now merges EntityTypes properly. Saint will now wuery using a stored UniProt accession that is already present in the model as well as with id/name. This will need to be updated shortly to store more than one UniProt accession. Added the ability to choose from the recommended name as well as the gene name for your species name. Can now search on all gene annotations rather than just the name. Now displays the submitted name for the UniProt URIs if the recommended name is not present. Will search additionally within the protein name if there were no uniprot hits at all on the gene annotations. performs simple query string parsing if there were no results at all (removal of final I and A, and tokenising on "_").
Modified Paths:
--------------
trunk/pom.xml
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/MasterQueryService.java
trunk/src/main/java/uk/ac/cisban/saint/client/MasterQueryServiceAsync.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/ResultsRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotGroup.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/UniprotRecord.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/uniprot/UniProtHelper.java
trunk/src/main/java/uk/ac/cisban/saint/querying/uniprot/UniProtQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/server/MasterQueryServiceImpl.java
trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/parsing/QueryParser.java
trunk/src/test/java/uk/ac/cisban/saint/client/structure/ResultsRecordTest.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/QueryParserTest.java
Property Changed:
----------------
trunk/
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From: <all...@us...> - 2009-07-23 15:01:50
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Revision: 11
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=11&view=rev
Author: allysonlister
Date: 2009-07-23 15:01:32 +0000 (Thu, 23 Jul 2009)
Log Message:
-----------
added a check on both the protein description and the gene records.
Modified Paths:
--------------
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
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From: <all...@us...> - 2009-07-24 14:13:57
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Revision: 12
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=12&view=rev
Author: allysonlister
Date: 2009-07-24 14:13:32 +0000 (Fri, 24 Jul 2009)
Log Message:
-----------
Now checks for the words "active" and "inactive", and uses both name and id each time, as we never know which one is the better phrase. Updated to libsbml 3.4.0 and uniprot 15.5
Modified Paths:
--------------
trunk/pom.xml
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/MasterQueryService.java
trunk/src/main/java/uk/ac/cisban/saint/client/MasterQueryServiceAsync.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/QueryParser.java
trunk/src/main/java/uk/ac/cisban/saint/server/MasterQueryServiceImpl.java
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From: <sta...@us...> - 2009-08-05 13:44:13
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Revision: 18
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=18&view=rev
Author: stahlblau
Date: 2009-08-05 13:43:52 +0000 (Wed, 05 Aug 2009)
Log Message:
-----------
upgraded to GWT 1.7.0; Centering everything; removing table labels on annotation table; renaming X buttons for "Remove from Consideration"; linking header and footer images; putting titles (tooltips) on everything;
Modified Paths:
--------------
trunk/pom.xml
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
trunk/src/main/java/uk/ac/cisban/saint/public/Annotator.css
trunk/src/main/java/uk/ac/cisban/saint/server/FileServlet.java
trunk/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: <sta...@us...> - 2009-08-05 16:29:26
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Revision: 21
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=21&view=rev
Author: stahlblau
Date: 2009-08-05 16:29:17 +0000 (Wed, 05 Aug 2009)
Log Message:
-----------
rolled everything back to GWT 1.5.3 due to insufficient gwt-maven-plugin support.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
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From: <all...@us...> - 2009-08-27 15:55:20
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Revision: 22
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=22&view=rev
Author: allysonlister
Date: 2009-08-27 15:55:10 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
Upgraded to libSBML 4.0.0. Changed from using plain constructors for things like model = new Model() ==> model = document.createModel(). This change is required with the latest version of libSBML, and it also has the added benefit of linking the newly-created object correctly to its owning model automatically.
Modified Paths:
--------------
trunk/pom.xml
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/server/SbmlModelServiceImpl.java
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From: <all...@us...> - 2009-08-27 16:09:40
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Revision: 23
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=23&view=rev
Author: allysonlister
Date: 2009-08-27 16:09:34 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
Added files referenced in supplementary material of accepted paper.
Modified Paths:
--------------
trunk/saint.iws
Added Paths:
-----------
trunk/docs/
trunk/docs/supplementary-data/
trunk/docs/supplementary-data/BIOMD0000000032-reannotate-from-intact.xml
trunk/docs/supplementary-data/BIOMD0000000032-reannotate-from-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000032-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000032.xml
trunk/docs/supplementary-data/BIOMD0000000087-l2v4-reannote.xml
trunk/docs/supplementary-data/BIOMD0000000087-l2v4-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000087-l2v4.xml
trunk/docs/supplementary-data/BIOMD0000000087.xml
trunk/docs/supplementary-data/BIOMD0000000189-reannotate.xml
trunk/docs/supplementary-data/BIOMD0000000189-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000189.xml
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From: <sta...@us...> - 2010-03-03 13:24:53
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Revision: 39
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=39&view=rev
Author: stahlblau
Date: 2010-03-03 13:24:47 +0000 (Wed, 03 Mar 2010)
Log Message:
-----------
May not be functional!
*CellML Integration
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/FileServlet.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/SbmlModelServiceImpl.java
trunk/src/test/java/uk/ac/cisban/saint/SbmlModelServiceImplTest.java
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLReader.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLWriter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/Adapter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
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From: <all...@us...> - 2010-05-17 11:09:46
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Revision: 46
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=46&view=rev
Author: allysonlister
Date: 2010-05-17 11:09:40 +0000 (Mon, 17 May 2010)
Log Message:
-----------
Updated code to not use deprecated GWT features to finish the upgrade to GWT 2.0.3. Note that one deprecated handler still exists in the code, as I wasn't sure how to upgrade it. Code compiles and runs in new development mode (though my local cellml installation is giving me problems unrelated to the upgrade). Due to the problems with CellML, cannot ensure that all conversions from listeners to handlers are working properly. I need to first fix the cellml installation locally before I can get past the "upload file" stage of Saint.
Fixed a couple of unit tests, and commented out all other errors/failures while Morgan focuses on the cellml errors. Will fix all unit test failures and errors as time permits.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateEvent.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/EntityTypeRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/InteractorSet.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotGroup.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GeneRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GoRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/InteractorRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/UniprotRecord.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/public/Annotator.css
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
trunk/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/TestCellMLBootstrap.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/string/StringServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/ModelServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipHandler.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabHandler.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateHandler.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/ModelLoadHandler.java
Removed Paths:
-------------
trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/ModelLoadListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/
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From: <sta...@us...> - 2010-05-17 11:24:24
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Revision: 47
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=47&view=rev
Author: stahlblau
Date: 2010-05-17 11:24:18 +0000 (Mon, 17 May 2010)
Log Message:
-----------
* More tweaking for CellML annotation and using the CVTerm class
* Removed the pesky mythical "Logger" class
Modified Paths:
--------------
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/SimpleRecord.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
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From: <all...@us...> - 2011-06-09 15:21:08
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Revision: 49
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=49&view=rev
Author: allysonlister
Date: 2011-06-09 15:21:02 +0000 (Thu, 09 Jun 2011)
Log Message:
-----------
Upgraded to libSBML 5, GWT 2.2.0, and cellml api 1.9. Various small fixes to allow for this change.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
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From: <all...@us...> - 2011-06-15 15:29:16
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Revision: 52
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=52&view=rev
Author: allysonlister
Date: 2011-06-15 15:29:10 +0000 (Wed, 15 Jun 2011)
Log Message:
-----------
Fixed bug that appears when the MIRIAM WS getLocations() method doesn't run as expected. Fixed bug in querying and display of Pathway Commons data. Modified tests such that they work with the updated libraries and code. Resulting changes also propogated to non-test code.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/MiriamService.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotGroup.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotResource.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GoRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/InteractorRecord.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/UniprotRecord.java
trunk/src/main/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/querying/string/StringQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/querying/uniprot/UniProtQuerier.java
trunk/src/main/java/uk/ac/cisban/saint/server/MasterQueryServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/test/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
Removed Paths:
-------------
trunk/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
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From: <all...@us...> - 2011-06-16 12:05:09
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Revision: 53
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=53&view=rev
Author: allysonlister
Date: 2011-06-16 12:05:03 +0000 (Thu, 16 Jun 2011)
Log Message:
-----------
All tests (except the MIRIAM WS getLocations() test) pass. Fixed minor error in the creation of the filename for the annotated model. Test for null return values for getLocations() now, as the method is behaving differently from how it used to.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/SbmlAdapter.java
trunk/src/main/resources/BIOMD0000000087.xml
trunk/src/test/java/uk/ac/cisban/saint/SbmlModelServiceImplTest.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/biomart/SaintBiomartSoapClientTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/string/StringServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/ModelServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
trunk/src/test/resources/BIOMD0000000087.xml
Removed Paths:
-------------
trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/TestCellMLBootstrap.java
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest2.java
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From: <all...@us...> - 2011-06-17 18:57:34
|
Revision: 56
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=56&view=rev
Author: allysonlister
Date: 2011-06-17 18:57:28 +0000 (Fri, 17 Jun 2011)
Log Message:
-----------
Updated the code based on a new version of the MIRIAM web services (1.1.2). Also added the beginning of installation instructions.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/server/MiriamServiceImpl.java
trunk/src/site/site.xml
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
Added Paths:
-----------
trunk/src/site/xdoc/
trunk/src/site/xdoc/installation.xml
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From: <all...@us...> - 2011-11-22 14:07:28
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Revision: 58
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=58&view=rev
Author: allysonlister
Date: 2011-11-22 14:07:17 +0000 (Tue, 22 Nov 2011)
Log Message:
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Added a not null check to SbmlManipulator. Changed query string for PC Querier to reflect what seems to be the expected argument ("format=") even though the documentation says something else ("output="). Updated installation instructions for libsbml version. Updated libsbml to 5.2.0 and java to 1.6 and uniprot japi to 2011.11. Updated tests to reflect these changes and other changes in the source databases.
Modified Paths:
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trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsQuerier.java
trunk/src/site/xdoc/installation.xml
trunk/src/test/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsServiceTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: <all...@us...> - 2012-02-23 16:43:46
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Revision: 60
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=60&view=rev
Author: allysonlister
Date: 2012-02-23 16:43:40 +0000 (Thu, 23 Feb 2012)
Log Message:
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Number of MIRIAM databases updated. Version of UniProt JAPI updated.
Modified Paths:
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trunk/pom.xml
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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