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From: <sta...@us...> - 2010-03-02 17:21:51
|
Revision: 35
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=35&view=rev
Author: stahlblau
Date: 2010-03-02 17:21:41 +0000 (Tue, 02 Mar 2010)
Log Message:
-----------
Commiting CellML code present in locally before attempting merge with trunk.
Modified Paths:
--------------
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/public/Annotator.html
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/SbmlModelServiceImpl.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sta...@us...> - 2010-03-02 17:20:17
|
Revision: 34
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=34&view=rev
Author: stahlblau
Date: 2010-03-02 17:20:07 +0000 (Tue, 02 Mar 2010)
Log Message:
-----------
Commiting CellML code present in locally before attempting merge with trunk.
Added Paths:
-----------
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/public/HelpText.html
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sta...@us...> - 2010-03-02 17:19:35
|
Revision: 33
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=33&view=rev
Author: stahlblau
Date: 2010-03-02 17:19:26 +0000 (Tue, 02 Mar 2010)
Log Message:
-----------
Modified Paths:
--------------
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/Annotator.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <all...@us...> - 2010-02-22 13:58:06
|
Revision: 32
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=32&view=rev
Author: allysonlister
Date: 2010-02-22 13:57:57 +0000 (Mon, 22 Feb 2010)
Log Message:
-----------
added Saint Requirements document for current and planned improvements to the system.
Added Paths:
-----------
trunk/docs/SaintRequirements.odt
trunk/docs/SaintRequirements.pdf
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <all...@us...> - 2010-02-18 16:01:08
|
Revision: 31
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=31&view=rev
Author: allysonlister
Date: 2010-02-18 16:00:56 +0000 (Thu, 18 Feb 2010)
Log Message:
-----------
added a center style to the new known issues link.
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
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From: <sta...@us...> - 2010-02-18 15:16:23
|
Revision: 30
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=30&view=rev
Author: stahlblau
Date: 2010-02-18 15:16:13 +0000 (Thu, 18 Feb 2010)
Log Message:
-----------
Added the Known Issues link.
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
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From: <sta...@us...> - 2010-02-18 15:15:22
|
Revision: 29
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=29&view=rev
Author: stahlblau
Date: 2010-02-18 15:15:13 +0000 (Thu, 18 Feb 2010)
Log Message:
-----------
Switched to Uniprot 15.14.
Modified Paths:
--------------
trunk/pom.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sta...@us...> - 2009-11-06 17:29:43
|
Revision: 28
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=28&view=rev
Author: stahlblau
Date: 2009-11-06 17:29:32 +0000 (Fri, 06 Nov 2009)
Log Message:
-----------
Integrated trunk with branch
Modified Paths:
--------------
branches/cellml_branch/pom.xml
branches/cellml_branch/saint.iws
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/Annotator.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/MasterQueryService.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/MasterQueryServiceAsync.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/structure/ResultsRecord.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotGroup.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/structure/records/UniprotRecord.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/uniprot/UniProtHelper.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/public/Annotator.css
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/public/Annotator.html
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/querying/uniprot/UniProtQuerier.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/FileServlet.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/MasterQueryServiceImpl.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/SbmlModelServiceImpl.java
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/server/ModelServiceTest.java
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java
Added Paths:
-----------
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabListener.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationAttributes.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/SaintImageBundle.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateListener.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/ModelLoadListener.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/QueryParser.java
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/client/structure/ResultsRecordTest.java
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/parsing/QueryParserTest.java
Removed Paths:
-------------
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabListener.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationAttributes.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/SaintImageBundle.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateListener.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/client/gui/listeners/ModelLoadListener.java
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/parsing/cellml/
branches/cellml_branch/src/main/java/uk/ac/cisban/saint/server/model_adapters/
branches/cellml_branch/src/test/java/uk/ac/cisban/saint/parsing/cellml/
branches/cellml_branch/src/test/resources/ciliberto_novak_tyson_2003_version03.cellml
branches/cellml_branch/src/test/resources/sachse_moreno_abildskov_2008_version05.cellml
Property Changed:
----------------
branches/cellml_branch/src/main/java/
branches/cellml_branch/src/test/
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
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From: <sta...@us...> - 2009-11-05 12:39:51
|
Revision: 27
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=27&view=rev
Author: stahlblau
Date: 2009-11-05 12:39:36 +0000 (Thu, 05 Nov 2009)
Log Message:
-----------
Switched to UniProt 15.10
Modified Paths:
--------------
trunk/pom.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <all...@us...> - 2009-10-07 13:25:36
|
Revision: 26
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=26&view=rev
Author: allysonlister
Date: 2009-10-07 13:25:29 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
removed some unnecessary imports.
Modified Paths:
--------------
trunk/src/test/java/uk/ac/cisban/saint/SbmlModelServiceImplTest.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
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From: <all...@us...> - 2009-10-07 13:24:45
|
Revision: 25
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=25&view=rev
Author: allysonlister
Date: 2009-10-07 13:24:21 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
New test to try to find a weird bug in adding SBO terms (doesn't affect most models). Also fixed a couple of older tests that were no longer compatible with libsbml 3.4.0.
Modified Paths:
--------------
trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
trunk/src/test/java/uk/ac/cisban/saint/server/ModelServiceTest.java
Added Paths:
-----------
trunk/src/test/java/uk/ac/cisban/saint/SbmlModelServiceImplTest.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
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From: <sta...@us...> - 2009-09-09 15:11:06
|
Revision: 24
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=24&view=rev
Author: stahlblau
Date: 2009-09-09 15:10:54 +0000 (Wed, 09 Sep 2009)
Log Message:
-----------
Straightened out the problem that caused parsing to fail in documents that weren't level 2 version 4. Thanks to Duncan Hull for the heads-up.
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulator.java
trunk/src/main/java/uk/ac/cisban/saint/server/SbmlModelServiceImpl.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
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From: Allyson L. <a.l...@ne...> - 2009-09-04 11:23:25
|
Hi all, Just a quick note to say that as of today, both the underlying code in the SourceForge SVN repository *and* the installation at http://www.cisban.ac.uk/saint are running with the latest libSBML update, version 4.0.0 Thanks, Allyson -- Allyson Lister http://themindwobbles.wordpress.com CISBAN, http://www.cisban.ac.uk Newcastle University |
|
From: <all...@us...> - 2009-08-27 16:09:40
|
Revision: 23
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=23&view=rev
Author: allysonlister
Date: 2009-08-27 16:09:34 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
Added files referenced in supplementary material of accepted paper.
Modified Paths:
--------------
trunk/saint.iws
Added Paths:
-----------
trunk/docs/
trunk/docs/supplementary-data/
trunk/docs/supplementary-data/BIOMD0000000032-reannotate-from-intact.xml
trunk/docs/supplementary-data/BIOMD0000000032-reannotate-from-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000032-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000032.xml
trunk/docs/supplementary-data/BIOMD0000000087-l2v4-reannote.xml
trunk/docs/supplementary-data/BIOMD0000000087-l2v4-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000087-l2v4.xml
trunk/docs/supplementary-data/BIOMD0000000087.xml
trunk/docs/supplementary-data/BIOMD0000000189-reannotate.xml
trunk/docs/supplementary-data/BIOMD0000000189-stripped.xml
trunk/docs/supplementary-data/BIOMD0000000189.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <all...@us...> - 2009-08-27 15:55:20
|
Revision: 22
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=22&view=rev
Author: allysonlister
Date: 2009-08-27 15:55:10 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
Upgraded to libSBML 4.0.0. Changed from using plain constructors for things like model = new Model() ==> model = document.createModel(). This change is required with the latest version of libSBML, and it also has the added benefit of linking the newly-created object correctly to its owning model automatically.
Modified Paths:
--------------
trunk/pom.xml
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/server/SbmlModelServiceImpl.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
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From: Morgan T. <m.t...@ne...> - 2009-08-05 16:42:36
|
I've rolled the trunk back to GWT 1.5.3. The GUI is now shiny again and everything compiles with Maven2. I've also updated biodev with the new version. -Morgan sta...@us... wrote: > Revision: 20 > http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=20&view=rev > Author: stahlblau > Date: 2009-08-05 15:55:18 +0000 (Wed, 05 Aug 2009) > > Log Message: > ----------- > Because 1.7 still breaks maven. > > Added Paths: > ----------- > branches/gwt1.7/src/ > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/Annotator.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/public/Annotator.css > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/server/FileServlet.java > branches/gwt1.7/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java > branches/gwt1.7/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java > > Removed Paths: > ------------- > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/Annotator.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/public/Annotator.css > branches/gwt1.7/src/main/java/uk/ac/cisban/saint/server/FileServlet.java > branches/gwt1.7/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java > branches/gwt1.7/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java > > > This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Saint-annotate-user mailing list > Sai...@li... > https://lists.sourceforge.net/lists/listinfo/saint-annotate-user |
|
From: <sta...@us...> - 2009-08-05 16:29:26
|
Revision: 21
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=21&view=rev
Author: stahlblau
Date: 2009-08-05 16:29:17 +0000 (Wed, 05 Aug 2009)
Log Message:
-----------
rolled everything back to GWT 1.5.3 due to insufficient gwt-maven-plugin support.
Modified Paths:
--------------
trunk/pom.xml
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sta...@us...> - 2009-08-05 15:55:30
|
Revision: 20
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=20&view=rev
Author: stahlblau
Date: 2009-08-05 15:55:18 +0000 (Wed, 05 Aug 2009)
Log Message:
-----------
Because 1.7 still breaks maven.
Added Paths:
-----------
branches/gwt1.7/src/
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/Annotator.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/public/Annotator.css
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/server/FileServlet.java
branches/gwt1.7/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
branches/gwt1.7/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
Removed Paths:
-------------
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/Annotator.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/public/Annotator.css
branches/gwt1.7/src/main/java/uk/ac/cisban/saint/server/FileServlet.java
branches/gwt1.7/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
branches/gwt1.7/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: <sta...@us...> - 2009-08-05 15:54:31
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Revision: 19
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=19&view=rev
Author: stahlblau
Date: 2009-08-05 15:54:21 +0000 (Wed, 05 Aug 2009)
Log Message:
-----------
Because 1.7 still breaks maven.
Added Paths:
-----------
branches/gwt1.7/
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From: <sta...@us...> - 2009-08-05 13:44:13
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Revision: 18
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=18&view=rev
Author: stahlblau
Date: 2009-08-05 13:43:52 +0000 (Wed, 05 Aug 2009)
Log Message:
-----------
upgraded to GWT 1.7.0; Centering everything; removing table labels on annotation table; renaming X buttons for "Remove from Consideration"; linking header and footer images; putting titles (tooltips) on everything;
Modified Paths:
--------------
trunk/pom.xml
trunk/saint.iws
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
trunk/src/main/java/uk/ac/cisban/saint/client/structure/ConstantsConverter.java
trunk/src/main/java/uk/ac/cisban/saint/public/Annotator.css
trunk/src/main/java/uk/ac/cisban/saint/server/FileServlet.java
trunk/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
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From: Morgan T. <m.t...@ne...> - 2009-07-30 17:46:43
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It's now slim and trim at http://www.cisban.ac.uk/saint . If you have time, test it out and make sure I haven't missed any bugs. Have a good weekend! -Morgan sta...@us... wrote: > Revision: 17 > http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=17&view=rev > Author: stahlblau > Date: 2009-07-30 17:41:41 +0000 (Thu, 30 Jul 2009) > > Log Message: > ----------- > Slimmed down the GUI and put the help under a popup. > > Modified Paths: > -------------- > trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java > trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java > trunk/src/main/java/uk/ac/cisban/saint/public/Annotator.html > > Added Paths: > ----------- > trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java > trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java > trunk/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java > trunk/src/main/java/uk/ac/cisban/saint/client/gui/SaintImageBundle.java > > > This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. Simplify your report design, integration and deployment - and focus on > what you do best, core application coding. Discover what's new with > Crystal Reports now. http://p.sf.net/sfu/bobj-july > _______________________________________________ > Saint-annotate-user mailing list > Sai...@li... > https://lists.sourceforge.net/lists/listinfo/saint-annotate-user |
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From: <sta...@us...> - 2009-07-30 17:41:54
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Revision: 17
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=17&view=rev
Author: stahlblau
Date: 2009-07-30 17:41:41 +0000 (Thu, 30 Jul 2009)
Log Message:
-----------
Slimmed down the GUI and put the help under a popup.
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/public/Annotator.html
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/HelpPopup.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/SaintImageBundle.java
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From: <sta...@us...> - 2009-07-30 14:55:40
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Revision: 16
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=16&view=rev
Author: stahlblau
Date: 2009-07-30 14:55:27 +0000 (Thu, 30 Jul 2009)
Log Message:
-----------
Moved all GUI elements out of Annotator; set up listeners to listen for events occurring to annotation items; moved most GUI elements out of AnnotationManager; made everything in the GUI package as private as possible (mostly protected where possible).
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationAttributes.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/Labels.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateEvent.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/DetailUpdateListener.java
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From: <sta...@us...> - 2009-07-30 10:31:38
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Revision: 15
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=15&view=rev
Author: stahlblau
Date: 2009-07-30 10:31:23 +0000 (Thu, 30 Jul 2009)
Log Message:
-----------
Changed libSBML to version 3.4.0 and Uniprot to 15.6
Modified Paths:
--------------
trunk/pom.xml
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From: <sta...@us...> - 2009-07-29 17:37:29
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Revision: 14
http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=14&view=rev
Author: stahlblau
Date: 2009-07-29 17:37:20 +0000 (Wed, 29 Jul 2009)
Log Message:
-----------
Organizing AnnotationManager a little more and adding listeners to deal with events, instead of using direct calls.
Modified Paths:
--------------
trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabListener.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
Added Paths:
-----------
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/
trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/ModelLoadListener.java
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