[Saint-annotate-user] SF.net SVN: saint-annotate:[46] trunk

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Revision: 46
          http://saint-annotate.svn.sourceforge.net/saint-annotate/?rev=46&view=rev
Author:   allysonlister
Date:     2010-05-17 11:09:40 +0000 (Mon, 17 May 2010)

Log Message:
-----------
Updated code to not use deprecated GWT features to finish the upgrade to GWT 2.0.3. Note that one deprecated handler still exists in the code, as I wasn't sure how to upgrade it. Code compiles and runs in new development mode (though my local cellml installation is giving me problems unrelated to the upgrade). Due to the problems with CellML, cannot ensure that all conversions from listeners to handlers are working properly. I need to first fix the cellml installation locally before I can get past the "upload file" stage of Saint.

Fixed a couple of unit tests, and commented out all other errors/failures while Morgan focuses on the cellml errors. Will fix all unit test failures and errors as time permits.

Modified Paths:
--------------
    trunk/pom.xml
    trunk/src/main/java/uk/ac/cisban/saint/client/AnnotationDetail.java
    trunk/src/main/java/uk/ac/cisban/saint/client/Annotator.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/AddPanel.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatePanel.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationManager.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotationSummaryTable.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/ContentPanel.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/FooterPanel.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/HeaderPanel.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/MainPanel.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/TaxonomyPanel.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateEvent.java
    trunk/src/main/java/uk/ac/cisban/saint/client/structure/EntityTypeRecord.java
    trunk/src/main/java/uk/ac/cisban/saint/client/structure/InteractorSet.java
    trunk/src/main/java/uk/ac/cisban/saint/client/structure/SbmlAnnotGroup.java
    trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GeneRecord.java
    trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/GoRecord.java
    trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/InteractorRecord.java
    trunk/src/main/java/uk/ac/cisban/saint/client/structure/records/UniprotRecord.java
    trunk/src/main/java/uk/ac/cisban/saint/parsing/cellml/CellMLManipulator.java
    trunk/src/main/java/uk/ac/cisban/saint/public/Annotator.css
    trunk/src/main/java/uk/ac/cisban/saint/server/model_adapters/CellMLAdapter.java
    trunk/src/test/java/uk/ac/cisban/saint/client/structure/ConstantsConverterTest.java
    trunk/src/test/java/uk/ac/cisban/saint/parsing/cellml/TestCellMLBootstrap.java
    trunk/src/test/java/uk/ac/cisban/saint/parsing/sbml/SbmlManipulatorTest.java
    trunk/src/test/java/uk/ac/cisban/saint/querying/pathwaycommons/PathwayCommonsServiceTest.java
    trunk/src/test/java/uk/ac/cisban/saint/querying/sbo/MiriamTest.java
    trunk/src/test/java/uk/ac/cisban/saint/querying/string/StringServiceTest.java
    trunk/src/test/java/uk/ac/cisban/saint/server/ModelServiceTest.java
    trunk/src/test/java/uk/ac/cisban/saint/server/SaintUniProtQueryServiceImplTest.java

Added Paths:
-----------
    trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipHandler.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabHandler.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateHandler.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/ModelLoadHandler.java

Removed Paths:
-------------
    trunk/src/main/java/uk/ac/cisban/saint/client/components/TooltipListener.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/AnnotatedModelTabListener.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/DetailUpdateListener.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/handlers/ModelLoadListener.java
    trunk/src/main/java/uk/ac/cisban/saint/client/gui/listeners/


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