rsf-devel — Developer mailing list

[rsf-devel] Mac OS arm64

[David N. <drd...@me...>]

I’m embarrassed to not be able to find the answer to my question online.
I’m on mac os apple silicon arm64.

Existing mac instructions are for macports as the installer package.
Best version of package installer these days  is brew so things like gfortran are in /opt/homebrew/bin and libraries in /opt/homebrew/lib.

Where do I put the PATH and LDPATH magic to get all of these found by the ./configure process.

Dave
P.S.
Running mac zsh which has twisted path configuration process.

Re: [rsf-devel] Issue with sf_floatwrite outputting complex

[Carlos A. da C. F. <c.d...@gm...>]

Hi Aaron,

As I understand it, if you don't explicitly set the type of the output (or
any other parameter), it will inherit from the input. In this case, a simple

sf_settype(out, SF_FLOAT);


should suffice.

Best,

Carlos
--
Carlos Alberto da Costa Filho, Ph.D.
Senior Research Scientist


On Fri, Jun 30, 2023 at 1:05 PM Aaron Girard <aar...@gm...>
wrote:

> Hello,
>
> I am working on a piece of code and am running into a problem concerning
> float versus complex output. The input is a complex array and the output
> should be a float array of the magnitude, but it is not.
>
> I wrote a test that takes an input in complex values, calculates the
> complex magnitude, and should output a float array of the same size. It
> compiles, but when run the output file is:
> esize=8 type=complex
> instead of:
> esize=4 type=float,
> and the file says it is 50% of it's expected length.
>
> Below is the example code, and an example of running it. Please let me
> know if yu have any suggestions that could help me solve this problem.
>
>
>
>
>
>
>
>
>
>
> /* test input complex output a float
>   */
>
> #include <math.h>
> #include <float.h>
> #include <complex.h>
>
> #include <rsf.h>
>
> int main(int argc, char* argv[])
> {
>     int ny,iy;
>     int nx,ix;
>
>     float dy,oy;
>     float dx,ox;
>
>     sf_complex **data;
>     float **disp;
>
>     sf_axis ax,ay;
>     sf_file in,out;
>
>     sf_init(argc,argv);
>     /*------------------------------------------------------------*/
>     in = sf_input("in");
>     out = sf_output("out");
>
>     /* read input file parameters */
>     if (SF_COMPLEX != sf_gettype(in)) sf_error("Need complex input");
>
>     if (!sf_histint(in,"n1",&ny)) sf_error("No n1= in input");
>     if (!sf_histfloat(in,"d1",&dy)) sf_error("No d1= in input");
>     if (!sf_histfloat(in,"o1",&oy)) oy=0.;
>
>     if (!sf_histint(in,"n2",&nx)) sf_error("No n2= in input");
>     if (!sf_histfloat(in,"d2",&dx)) sf_error("No d2= in input");
>     if (!sf_histfloat(in,"o2",&ox)) ox=0.;
>
>     /* output file parameters */
>     ax = sf_maxa(nx,ox,dx);
>     sf_oaxa(out,ax,1);
>
>     ay = sf_maxa(ny,oy,dy);
>     sf_oaxa(out,ay,2);
>
>     /* memory allocations */
>     data     = sf_complexalloc2(nx,ny);
>     disp     = sf_floatalloc2(nx,ny);
>
>
>     for (iy = 0; iy < ny; iy++) {
>         for (ix = 0; ix < nx; ix++) {
>             data[iy][ix]     = 0.;
>        }
>     }
>     sf_complexread(data[0],ny*nx,in);
>
>     for (iy = 0; iy < ny; iy++) {
>         for (ix = 0; ix < nx; ix++) {
>             disp[iy][ix] = 0.;
>         }
>     }
>     for (iy = 0; iy < ny; iy++) {
>         for (ix = 0; ix < nx; ix++) {
>             disp[iy][ix] = sqrt(crealf(data[iy][ix])*crealf(data[iy][ix])
> + cimagf(data[iy][ix])*cimagf(data[iy][ix]));
>         }
>     }
>     /* output dispersion */
>     sf_floatwrite(disp[0],nx*ny,out);
>
>     exit(0);
> }
>
>  ---------------------------------------------------------------
>
> [agirard@c038 Aaron]$ sfspike n1=100 d1=0.002 k1=15 | sfbandpass flo=1
> fhi=90 | sfspray axis=2 n=100 d=5 | sffft1 |
> $RSFSRC/user/agirard/sftest_comp > foo.rsf
> sffft1: using 1 of 1 threads
>
> [agirard@c038 Aaron]$ sfin foo.rsf
> foo.rsf:
>     in="/projects/cwpshell/scratch/foo.rsf@"
>     esize=8 type=complex form=native
>     n1=100         d1=5           o1=0          label1="" unit1=""
>     n2=51          d2=5           o2=0          label2="" unit2=""
>     n3=1           d3=?           o3=?
> 5100 elements 40800 bytes
> sfin: Actually 20400 bytes, 50% of expected.
>
>
> ___________________
> *Aaron Girard, PhD*
> Research Associate
> Department of Geophysics
> Colorado School of Mines
> _______________________________________________
> RSF-devel mailing list
> RSF...@li...
> https://lists.sourceforge.net/lists/listinfo/rsf-devel
>

[rsf-devel] Issue with sf_floatwrite outputting complex

[Aaron G. <aar...@gm...>]

Hello,

I am working on a piece of code and am running into a problem concerning
float versus complex output. The input is a complex array and the output
should be a float array of the magnitude, but it is not.

I wrote a test that takes an input in complex values, calculates the
complex magnitude, and should output a float array of the same size. It
compiles, but when run the output file is:
esize=8 type=complex
instead of:
esize=4 type=float,
and the file says it is 50% of it's expected length.

Below is the example code, and an example of running it. Please let me know
if yu have any suggestions that could help me solve this problem.










/* test input complex output a float
  */

#include <math.h>
#include <float.h>
#include <complex.h>

#include <rsf.h>

int main(int argc, char* argv[])
{
    int ny,iy;
    int nx,ix;

    float dy,oy;
    float dx,ox;

    sf_complex **data;
    float **disp;

    sf_axis ax,ay;
    sf_file in,out;

    sf_init(argc,argv);
    /*------------------------------------------------------------*/
    in = sf_input("in");
    out = sf_output("out");

    /* read input file parameters */
    if (SF_COMPLEX != sf_gettype(in)) sf_error("Need complex input");

    if (!sf_histint(in,"n1",&ny)) sf_error("No n1= in input");
    if (!sf_histfloat(in,"d1",&dy)) sf_error("No d1= in input");
    if (!sf_histfloat(in,"o1",&oy)) oy=0.;

    if (!sf_histint(in,"n2",&nx)) sf_error("No n2= in input");
    if (!sf_histfloat(in,"d2",&dx)) sf_error("No d2= in input");
    if (!sf_histfloat(in,"o2",&ox)) ox=0.;

    /* output file parameters */
    ax = sf_maxa(nx,ox,dx);
    sf_oaxa(out,ax,1);

    ay = sf_maxa(ny,oy,dy);
    sf_oaxa(out,ay,2);

    /* memory allocations */
    data     = sf_complexalloc2(nx,ny);
    disp     = sf_floatalloc2(nx,ny);


    for (iy = 0; iy < ny; iy++) {
        for (ix = 0; ix < nx; ix++) {
            data[iy][ix]     = 0.;
       }
    }
    sf_complexread(data[0],ny*nx,in);

    for (iy = 0; iy < ny; iy++) {
        for (ix = 0; ix < nx; ix++) {
            disp[iy][ix] = 0.;
        }
    }
    for (iy = 0; iy < ny; iy++) {
        for (ix = 0; ix < nx; ix++) {
            disp[iy][ix] = sqrt(crealf(data[iy][ix])*crealf(data[iy][ix]) +
cimagf(data[iy][ix])*cimagf(data[iy][ix]));
        }
    }
    /* output dispersion */
    sf_floatwrite(disp[0],nx*ny,out);

    exit(0);
}

 ---------------------------------------------------------------

[agirard@c038 Aaron]$ sfspike n1=100 d1=0.002 k1=15 | sfbandpass flo=1
fhi=90 | sfspray axis=2 n=100 d=5 | sffft1 |
$RSFSRC/user/agirard/sftest_comp > foo.rsf
sffft1: using 1 of 1 threads

[agirard@c038 Aaron]$ sfin foo.rsf
foo.rsf:
    in="/projects/cwpshell/scratch/foo.rsf@"
    esize=8 type=complex form=native
    n1=100         d1=5           o1=0          label1="" unit1=""
    n2=51          d2=5           o2=0          label2="" unit2=""
    n3=1           d3=?           o3=?
5100 elements 40800 bytes
sfin: Actually 20400 bytes, 50% of expected.


___________________
*Aaron Girard, PhD*
Research Associate
Department of Geophysics
Colorado School of Mines

[rsf-devel] madagascar-4.0

[Sergey F. <ser...@gm...>]

Dear developers,

The long anticipated stable release of Madagascar-4.0 is available for
testing at
https://github.com/ahay/src/tree/madagascar-4.0

In addition to numerous other extensions and improvements, the main changes
in this release:

1. By switching the SCons version to scons-4.4, we are fully switching to
python3 and phasing out support for python2.
2. Examples are provided for integrating Madagascar's SConstructs with
Python-based deep-learning frameworks.

To test installation:

git clone https://github.com/ahay/src.git
git checkout madagascar-4.0

1. set RSFROOT to a new location
2. Modify PATH and PYTHONPATH to remove the old instance of RSFROOT
3. Run ./configure; make install

Let us test the compilation on different platforms before this version gets
released.

SF

[rsf-devel] Vector Engine performance

[IKUTA MASASHI(生田 将. <m-...@ne...>]

Dear All,

I did some performance measurements using our hardware named Vector Engine. It is an accelerator like GPGPU. Please see attached for details and if you are interested, please contact me.

Best Regards,

Masa Ikuta

-------------------------------
NEC Corporation
AI Platform Division
m-...@ne...

[rsf-devel] First Madagascar online conference

[Zhicheng G. <zhi...@ut...>]

Hi all,

The first ever worldwide Madagascar conference will take place on June 21-27, 2021. The participation is free of charge.
Please mark your calendar and fill the form at https://forms.office.com/r/hqVLVYGURC to indicate an interest in participation.

https://ahay.org/blog/2021/05/05/online-conference/

Best regards,
Zhicheng

--
Zhicheng Geng
Ph.D. Student
Bureau of Economic Geology
The University of Texas at Austin

[rsf-devel] Join our free webinar

[IKUTA MASASHI(生田 将. <m-...@ne...>]

Dear All,

I am planning to conduct a free webinar using Madagascar on March 4th and March 10th .
Please register and join.

As the attached flyer says, we will first introduce our product named Vector Engine and then demonstrate running RTM program on it.
Vector Engine is a vector accelerator card and you can run Fortran/C/C++ programs as it is (without using CUDA nor OpenACC).

About
Vector Engine (vector accelerator card)
https://<https://www.nec.com/en/global/solutions/hpc/Geosciences/index.html>www.nec.com/en/global/solutions/hpc/Geosciences/index.html<https://www.nec.com/en/global/solutions/hpc/Geosciences/index.html>

Register for the webinar
https://jp.surveymonkey.com/r/JSQ3L7S

----
Masa Ikuta
m-...@ne...
NEC Corporation

[rsf-devel] Slack for Madagascar

[Zhicheng G. <zhi...@ut...>]

Hi all,

Hope this email finds you healthy.

For better discussion on Madagascar usage and development, we have recently created a slack workspace for Madagascar.
Please feel free to join us using the following link.
https://join.slack.com/t/ahayorg/shared_invite/zt-hkyvgitg-M2E_TTgg6G1pL2664ax~QQ

Best regards,
Zhicheng

Re: [rsf-devel] sfgraph3

[Zhicheng G. <zhi...@ut...>]

Hi Chenglong,

I think a more common used program is sfgrey3 http://ahay.org/blog/2012/04/01/program-of-the-month-sfgrey3/.
You can find one example how to use it here http://ahay.org/RSF/book/geo384w/hw3/gulf.html.
Remember to us byte before grey3.
Hope this is something you are looking for.

Zhicheng
On Apr 9, 2020, 12:45 PM -0500, Chenglong Duan <che...@gm...>, wrote:
> Dear all,
>
> I would like to plot one point (x,y,z) in the 3D figure, and expand into a plane view using flat=y.
> I know I can use sfgraph3 to plot it, but failed after several trials. Could you let me know how I can arrange my rsf file and also provide a demo script to generate the figure?
> Thanks,
> Chenglong
> _______________________________________________
> RSF-devel mailing list
> RSF...@li...
> https://lists.sourceforge.net/lists/listinfo/rsf-devel

[rsf-devel] sfgraph3

[Chenglong D. <che...@gm...>]

Dear all,

I would like to plot one point (x,y,z) in the 3D figure, and expand into a
plane view using flat=y.
I know I can use sfgraph3 to plot it, but failed after several trials.
Could you let me know how I can arrange my rsf file and also provide a demo
script to generate the figure?
Thanks,
Chenglong

[rsf-devel] Spack recipe?

[Dave N. <nic...@sl...>]

Has anyone done a spack recipe for Madagascar?

https://github.com/spack/spack

It promises escape from dependency hell.
Madagascar is among the best for installing but spack is better.

Dave Nichols
Exploration and Field Development SME, STIC
832-794-1136



Schlumberger-Private

Re: [rsf-devel] Unable to run configure on Fedora 29

[fujisan <fuj...@gm...>]

Thanks to Zhicheng, I was able to compile successfully madagascar on Fedora
29?.

First, one must install libtirpc-devel.

Then add in framework/configure.py (around line 317)

    elif plat['OS'] == 'linux' and plat['distro'] == 'fedora':
        context.env['CPPPATH'] =
path_get(context,'CPPPATH','/usr/include/tirpc')
        LIBS.append('tirpc')

Then ./configure --prefix=/path/to/install/dir API=gfortran

Then make.



On Tue, Jul 16, 2019 at 9:46 AM fujisan <fuj...@gm...> wrote:

> Hi
> I'm trying to compile madagascar on Fedora 29 but running the configure
> always gives me the following error:
>
> checking for Python ... /usr/bin/python
> checking Python version ... 2.7.15
> checking for RSFROOT ... /usr/local/madagascar
> checking for SCons ... /usr/bin/scons
> checking SCons version ... v3.0.1.74b2c53bc42290e911b334a6b44f187da698a668
> Running RSFROOT=/usr/local/madagascar /usr/bin/scons  config ...
> ------------------------
> scons: Reading SConscript files ...
> checking platform ... (cached) linux [fedora]
> checking for C compiler ... (cached) gcc
> checking if gcc works ... yes
> checking if gcc accepts '-x c -std=gnu99 -Wall -pedantic' ... yes
> checking for ar ... (cached) ar
> checking for libraries ... no
>
>   Needed package: glibc-headers
>
>   Fatal missing dependency
> ------------------------
> Done with configuration.
>
> I have installed all the required libraries.
>
> What am I missing?
>
> Fuji
>
>

[rsf-devel] Unable to run configure on Fedora 29

[fujisan <fuj...@gm...>]

Hi
I'm trying to compile madagascar on Fedora 29 but running the configure
always gives me the following error:

checking for Python ... /usr/bin/python
checking Python version ... 2.7.15
checking for RSFROOT ... /usr/local/madagascar
checking for SCons ... /usr/bin/scons
checking SCons version ... v3.0.1.74b2c53bc42290e911b334a6b44f187da698a668
Running RSFROOT=/usr/local/madagascar /usr/bin/scons  config ...
------------------------
scons: Reading SConscript files ...
checking platform ... (cached) linux [fedora]
checking for C compiler ... (cached) gcc
checking if gcc works ... yes
checking if gcc accepts '-x c -std=gnu99 -Wall -pedantic' ... yes
checking for ar ... (cached) ar
checking for libraries ... no

  Needed package: glibc-headers

  Fatal missing dependency
------------------------
Done with configuration.

I have installed all the required libraries.

What am I missing?

Fuji

[rsf-devel] www.ahay.org admin needed

[Sjoerd A.L. de R. <sal...@gm...>]

Dear All,

I am looking for a successor to maintain the www.ahay.org website.
Please contact me (cc Sergey) if you are interested in taking over.

Best wishes,
Sjoerd

[rsf-devel] sfgrey polarity=y changes the custom colour scheme of the plot

[Julien M. <mor...@gm...>]

Hi,
I have noticed that when I used the parameter polarity =y I was getting a
different color scheme
like sfgrey color=veridis polarity=y was giving me x or someother one from
the custom list.
Cheers,

Julien

Re: [rsf-devel] Issue with rendering pdfs using madagascar

[Zhicheng G. <zhi...@ut...>]

The problem is caused by this line in tex.py:
exec(progs, locals())
And it used to be 
exec progs in locals()

This actually is a bug from python. Check the following link.
https://bugs.python.org/issue21591 <https://bugs.python.org/issue21591>
And this problem is fixed in Python 2.7.9.
Maybe you can upgrade your python or if it’s difficult to do that I can help you fix it in Madagascar’s source code.

Zhicheng

> On Dec 13, 2018, at 11:33, Luke Decker <dec...@gm...> wrote:
> 
> Antananarivoians,
> 
> Let me join Julien in identifying a peculiar emergent issue in Madagascar!  
> Attempting to render pdfs using SConstruct (even $RSFSRC/book/geo384h/hw1 , which I used to make sure it wasn’t just my manuscript) produces the following error on my Linux workstation:
> 
> [luke@osiris hw1]$ scons pdf
> scons: Reading SConscript files ...
> SyntaxError: unqualified exec is not allowed in function 'colorize' it contains a nested function with free variables (tex.py, line 636)
> 
> I identified a workaround for those needing to generate manuscripts ASAP: switching to the dtw branch I created a couple months ago and reinstalling Madagascar mitigates this error.
> 
> This makes me think the error was sourced by some modifications made between then and now.
> 
> FYI here is a relevant error that gets thrown during installation of the main branch most current version of Madagascar:
> 
> __pycompile(["build/framework/rsf/tex.pyc"], ["build/framework/rsf/tex.py"])
> SyntaxError: unqualified exec is not allowed in function 'colorize' it contains a nested function with free variables (tex.py, line 636)
> 
> Install file: "build/framework/rsf/tex.pyc" as "/workspace/luke/madagascar/lib/python2.7/site-packages/rsf/tex.pyc"
> scons: *** [/workspace/luke/madagascar/lib/python2.7/site-packages/rsf/tex.pyc] build/framework/rsf/tex.pyc: No such file or directory
> Install file: "config.py" as "/workspace/luke/madagascar/share/madagascar/etc/config.py"
> scons: done building targets (errors occurred during build).
> 
> 
> Thanks,
> 
> Luke
> _______________________________________________
> RSF-devel mailing list
> RSF...@li...
> https://lists.sourceforge.net/lists/listinfo/rsf-devel

[rsf-devel] Issue with rendering pdfs using madagascar

[Luke D. <dec...@gm...>]

Antananarivoians,

Let me join Julien in identifying a peculiar emergent issue in Madagascar!  
Attempting to render pdfs using SConstruct (even $RSFSRC/book/geo384h/hw1 , which I used to make sure it wasn’t just my manuscript) produces the following error on my Linux workstation:

[luke@osiris hw1]$ scons pdf
scons: Reading SConscript files ...
SyntaxError: unqualified exec is not allowed in function 'colorize' it contains a nested function with free variables (tex.py, line 636)

I identified a workaround for those needing to generate manuscripts ASAP: switching to the dtw branch I created a couple months ago and reinstalling Madagascar mitigates this error.

This makes me think the error was sourced by some modifications made between then and now.

FYI here is a relevant error that gets thrown during installation of the main branch most current version of Madagascar:

__pycompile(["build/framework/rsf/tex.pyc"], ["build/framework/rsf/tex.py"])
SyntaxError: unqualified exec is not allowed in function 'colorize' it contains a nested function with free variables (tex.py, line 636)

Install file: "build/framework/rsf/tex.pyc" as "/workspace/luke/madagascar/lib/python2.7/site-packages/rsf/tex.pyc"
scons: *** [/workspace/luke/madagascar/lib/python2.7/site-packages/rsf/tex.pyc] build/framework/rsf/tex.pyc: No such file or directory
Install file: "config.py" as "/workspace/luke/madagascar/share/madagascar/etc/config.py"
scons: done building targets (errors occurred during build).


Thanks,

Luke

Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[Karl S. <k_s...@ho...>]

Zhicheng,

Good catch on my missing include file.  I updated from git and Madagascar now builds.  Thanks!


I am now back the problem that sfpen does not work on pipe or top open .vpl file.  I run:

355  sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" | sfpen

or:

356  sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" >spike.vpl

357  <spike.vpl | sfpen

Either get the message

Abort trap: 6


and a window pops up titled "Problem Report form sfpen".  I have attached snapshot of the beginning of the file and the full text in the scroll window is below.

Karl Schleiche


Process:               sfpen [85263]

Path:                  /Users/USER/*/sfpen

Identifier:            sfpen

Version:               0

Code Type:             X86-64 (Native)

Parent Process:        bash [3140]

Responsible:           sfpen [85263]

User ID:               501


Date/Time:             2018-11-02 08:42:20.154 -0500

OS Version:            Mac OS X 10.14 (18A391)

Report Version:        12

Bridge OS Version:     3.0 (16P375)

Anonymous UUID:        D8EE37CF-8468-5A4D-6ED6-7F98F20F2213


Sleep/Wake UUID:       937C3F4B-1E14-419C-8DC2-50BAB1CBB7A5


Time Awake Since Boot: 160000 seconds

Time Since Wake:       3000 seconds


System Integrity Protection: enabled


Crashed Thread:        0  Dispatch queue: com.apple.main-thread


Exception Type:        EXC_CRASH (SIGABRT)

Exception Codes:       0x0000000000000000, 0x0000000000000000

Exception Note:        EXC_CORPSE_NOTIFY


Application Specific Information:

abort() called

HIToolbox: could not open() theme file


Thread 0 Crashed:: Dispatch queue: com.apple.main-thread

0   libsystem_kernel.dylib         0x00007fff6ee0fb86 __pthread_kill + 10

1   libsystem_pthread.dylib        0x00007fff6eec5c50 pthread_kill + 285

2   libsystem_c.dylib              0x00007fff6ed791c9 abort + 127

3   com.apple.HIToolbox            0x00007fff40f09f00 OpenThemeResFileMapped + 228

4   com.apple.HIToolbox            0x00007fff40f09def TTheme::Open() + 15

5   com.apple.HIToolbox            0x00007fff40f09d70 TTheme::GetCurrent() + 98

6   com.apple.HIToolbox            0x00007fff40f09c08 _HIThemeGetVibrantRenderer + 17

7   com.apple.HIToolbox            0x00007fff40f09b51 _HIThemeDrawAppleMenuTitle + 394

8   com.apple.HIToolbox            0x00007fff40f0665a HIMenuBarView::DrawOnce(CGRect, CGRect, bool, bool, CGContext*) + 1044

9   com.apple.HIToolbox            0x00007fff40f0615e HIMenuBarView::DrawSelf(short, __HIShape const*, CGContext*) + 574

10  com.apple.HIToolbox            0x00007fff40f05ba2 HIMenuBarView::DrawWithoutCustomization(short, __HIShape const*, CGContext*) + 82

11  com.apple.HIToolbox            0x00007fff40f05b3a HIMenuBarView::DrawingDelegateHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 258

12  com.apple.HIToolbox            0x00007fff40ed38d9 DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1502

13  com.apple.HIToolbox            0x00007fff40ed2c16 SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 371

14  com.apple.HIToolbox            0x00007fff40ed2a9c SendEventToEventTargetWithOptions + 45

15  com.apple.HIToolbox            0x00007fff40f056ad HIView::SendDraw(short, OpaqueGrafPtr*, __HIShape const*, CGContext*) + 337

16  com.apple.HIToolbox            0x00007fff40f05111 HIView::RecursiveDrawComposited(__HIShape const*, __HIShape const*, unsigned int, HIView*, CGContext*, unsigned char, double) + 585

17  com.apple.HIToolbox            0x00007fff40f0535f HIView::RecursiveDrawComposited(__HIShape const*, __HIShape const*, unsigned int, HIView*, CGContext*, unsigned char, double) + 1175

18  com.apple.HIToolbox            0x00007fff40f04b63 HIView::DrawComposited(short, OpaqueGrafPtr*, __HIShape const*, unsigned int, HIView*, CGContext*) + 865

19  com.apple.HIToolbox            0x00007fff40f047f0 HIView::Render(unsigned int, CGContext*) + 54

20  com.apple.HIToolbox            0x00007fff40f03ef1 WindowData::PrepareForVisibility() + 153

21  com.apple.HIToolbox            0x00007fff40f296ab _ShowHideWindows + 285

22  com.apple.HIToolbox            0x00007fff40f03928 ShowHide + 35

23  com.apple.HIToolbox            0x00007fff40ef3de5 MBWindows::GetWindowOnDisplay(unsigned int, unsigned char) + 289

24  com.apple.HIToolbox            0x00007fff40ef3b93 MenuBarInstance::ForEachWindowDo(unsigned char, bool (OpaqueWindowPtr*, unsigned int) block_pointer) + 167

25  com.apple.HIToolbox            0x00007fff40ef38b6 MenuBarInstance::UpdateWindowBoundsAndResolution() + 158

26  com.apple.HIToolbox            0x00007fff40ef3695 MenuBarInstance::Show(MenuBarAnimationStyle, unsigned char, unsigned char, unsigned char, unsigned char) + 273

27  com.apple.HIToolbox            0x00007fff40f292e1 MenuBarInstance::UpdateAggregateUIMode(MenuBarAnimationStyle, unsigned char, unsigned char, unsigned char) + 827

28  com.apple.HIToolbox            0x00007fff40f10023 MenuBarInstance::ForEachMenuBarDo(void (MenuBarInstance*) block_pointer) + 47

29  com.apple.HIToolbox            0x00007fff40f28f49 UpdateAllAggregateUIModes(MenuBarAnimationStyle, unsigned char) + 126

30  com.apple.HIToolbox            0x00007fff40f28ea5 SetSystemUIMode + 168

31  com.apple.AppKit               0x00007fff3f18bbf0 -[NSApplication finishLaunching] + 735

32  com.apple.glut                 0x00007fff4438f0cd -[GLUTApplication runOnce] + 128

33  com.apple.glut                 0x00007fff4439b2f5 glutCheckLoop + 97

34  sfpen                          0x000000010a286ee5 oglclose + 85

35  sfpen                          0x000000010a28fdc4 proc_vplot + 276

36  sfpen                          0x000000010a28fc57 main + 1111

37  libdyld.dylib                  0x00007fff6ecd1085 start + 1


Thread 1:

0   libsystem_pthread.dylib        0x00007fff6eec2408 start_wqthread + 0

1   ???                            0x0000000054485244 0 + 1414025796


Thread 2:

0   libsystem_pthread.dylib        0x00007fff6eec2408 start_wqthread + 0

1   ???                            0x0000000054485244 0 + 1414025796


Thread 3:

0   libsystem_pthread.dylib        0x00007fff6eec2408 start_wqthread + 0

1   ???                            0x0000000054485244 0 + 1414025796


Thread 0 crashed with X86 Thread State (64-bit):

  rax: 0x0000000000000000  rbx: 0x0000000117c685c0  rcx: 0x00007ffee5971318  rdx: 0x0000000000000000

  rdi: 0x0000000000000307  rsi: 0x0000000000000006  rbp: 0x00007ffee5971350  rsp: 0x00007ffee5971318

   r8: 0x00000000892f1d3d   r9: 0x00007fc892f00000  r10: 0x0000000000000000  r11: 0x0000000000000206

  r12: 0x0000000000000307  r13: 0x00007ffee59717c0  r14: 0x0000000000000006  r15: 0x000000000000002d

  rip: 0x00007fff6ee0fb86  rfl: 0x0000000000000206  cr2: 0x00007fffa0d6d188



Logical CPU:     0

Error Code:      0x02000148

Trap Number:     133



Binary Images:

       0x10a285000 -        0x10a2a2ff3 +sfpen (0) <BAF01498-8E7E-3AD2-9FAE-27BF11085E5F> /Users/USER/*/sfpen

       0x10dfbb000 -        0x10dfbe047  libobjc-trampolines.dylib (750) <B81473FA-927B-3852-BC34-66E66AAE24F4> /usr/lib/libobjc-trampolines.dylib

       0x10e5a5000 -        0x10e66eff7  com.apple.AMDRadeonX4000GLDriver (2.0.36 - 2.0.0) <0A445D3B-E2FC-3808-AB69-0AF62ED70D14> /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/AMDRadeonX4000GLDriver

       0x117bb2000 -        0x117c306a7  dyld (625.13) <D6387150-2FB8-3066-868D-72E1B1C43982> /usr/lib/dyld

    0x7fff36f08000 -     0x7fff3767fff7  ATIRadeonX4000SCLib.dylib (2.0.36) <C19893B6-EE0A-3A4D-BF3F-5B1221942109> /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/ATIRadeonX4000SCLib.dylib

    0x7fff3939e000 -     0x7fff3a17eff7  com.apple.driver.AppleIntelKBLGraphicsGLDriver (12.0.34 - 12.0.0) <D99C80C5-4B20-3A45-A3E3-CD7E3012A428> /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver

    0x7fff3db63000 -     0x7fff3db67fff  com.apple.agl (3.3.2 - AGL-3.3.2) <81130C05-30AD-3BDA-BB9C-72ADDD5FAA2C> /System/Library/Frameworks/AGL.framework/Versions/A/AGL

    0x7fff3df33000 -     0x7fff3df33fff  com.apple.Accelerate (1.11 - Accelerate 1.11) <2C602CED-72CA-37C2-BDF5-31697FC9100B> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate

    0x7fff3df34000 -     0x7fff3df4afe3  libCGInterfaces.dylib (506.19) <6455899E-BAC7-34D1-802B-FFE19A2337E2> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib

    0x7fff3df4b000 -     0x7fff3e5ebfe3  com.apple.vImage (8.1 - ???) <65912AFB-D4C1-3494-AE97-DDFDAF3BE1EB> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage

    0x7fff3e5ec000 -     0x7fff3e863fd7  libBLAS.dylib (1243.200.4) <76710990-AE2B-300E-88BB-797ABAD74956> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib

    0x7fff3e864000 -     0x7fff3e8d6fe7  libBNNS.dylib (38.200.5) <5F3A4021-8FF8-30E8-B84A-AA2BD70F4151> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBNNS.dylib

    0x7fff3e8d7000 -     0x7fff3ec7dfff  libLAPACK.dylib (1243.200.4) <45722A8A-5788-3C4C-ADD9-1812763FA635> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib

    0x7fff3ec7e000 -     0x7fff3ec93ffb  libLinearAlgebra.dylib (1243.200.4) <E923DA33-B142-3A73-A80A-642878D19099> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib

    0x7fff3ec94000 -     0x7fff3ec99ff3  libQuadrature.dylib (3.200.2) <6FFAC142-415D-3AF0-BC09-336302F11934> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libQuadrature.dylib

    0x7fff3ec9a000 -     0x7fff3ed17ffb  libSparse.dylib (79.200.5) <0D7E71A4-10D2-3979-B386-D2426ADAF6D7> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.dylib

    0x7fff3ed18000 -     0x7fff3ed2bffb  libSparseBLAS.dylib (1243.200.4) <00D6FC17-B739-3259-90A4-92AC8BBE03D6> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparseBLAS.dylib

    0x7fff3ed2c000 -     0x7fff3ef10ff3  libvDSP.dylib (671.201.1) <716585BD-04D7-30A9-B315-689184275E38> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib

    0x7fff3ef11000 -     0x7fff3efc6ff3  libvMisc.dylib (671.201.1) <EDA66C06-A11F-3EE5-96D5-B20893448899> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib

    0x7fff3efc7000 -     0x7fff3efc7fff  com.apple.Accelerate.vecLib (3.11 - vecLib 3.11) <DADD83A2-550F-3570-8D71-16614C6A4CE0> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib

    0x7fff3f178000 -     0x7fff3ff97ff3  com.apple.AppKit (6.9 - 1671) <E1B2CAF1-9231-3B3D-BD9E-B770FE87F407> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit

    0x7fff3ffe9000 -     0x7fff3ffe9fff  com.apple.ApplicationServices (50.1 - 50.1) <1B71604B-9AC5-3A2F-8CB7-0EFA34A20F12> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices

    0x7fff3ffea000 -     0x7fff40055ff7  com.apple.ApplicationServices.ATS (377 - 453.11) <7599E619-EE21-3EB7-875B-AE3B8D3E13BB> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS

    0x7fff400ee000 -     0x7fff4020dfff  libFontParser.dylib (228.6) <E800074F-62CF-340A-A5A7-B8BE5B560045> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib

    0x7fff4020e000 -     0x7fff40259fff  libFontRegistry.dylib (228.12) <480D472D-C8FB-321D-86EC-2EA6927A97AD> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib

    0x7fff402b8000 -     0x7fff402ebff7  libTrueTypeScaler.dylib (228.6) <D23BFDE4-8664-335A-B43B-A13A8EF29E40> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libTrueTypeScaler.dylib

    0x7fff40355000 -     0x7fff40359ff3  com.apple.ColorSyncLegacy (4.13.0 - 1) <90641B6B-D07B-3577-B594-965825544B60> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSyncLegacy.framework/Versions/A/ColorSyncLegacy

    0x7fff403f6000 -     0x7fff40448ff3  com.apple.HIServices (1.22 - 627.14.2) <01F309D6-32E7-3C4F-A38B-8206EE3076CC> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices

    0x7fff40449000 -     0x7fff40457ff3  com.apple.LangAnalysis (1.7.0 - 1.7.0) <67BC5855-B7A3-39E6-B5DD-52B287EB1532> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis

    0x7fff40458000 -     0x7fff404a4fff  com.apple.print.framework.PrintCore (14.0 - 503.7) <C13BC56A-65F4-35B1-9E33-51FE6F3B06FD> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore

    0x7fff404a5000 -     0x7fff404e0ff7  com.apple.QD (3.12 - 407.2) <94A30038-C545-327A-B1C0-E19C79D62BAB> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD

    0x7fff404e1000 -     0x7fff404edff7  com.apple.speech.synthesis.framework (8.0.15 - 8.0.15) <A96C744B-B1AD-32E3-BA72-7A221684BE3F> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis

    0x7fff404ee000 -     0x7fff4078aff7  com.apple.audio.toolbox.AudioToolbox (1.14 - 1.14) <89D2529D-CF36-3081-A700-70892F888718> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox

    0x7fff4078c000 -     0x7fff4078cfff  com.apple.audio.units.AudioUnit (1.14 - 1.14) <8B9A5ADB-E62C-3838-BB5E-AF20CAE449CC> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit

    0x7fff40af0000 -     0x7fff40eb1ff7  com.apple.CFNetwork (974.1 - 974.1) <ACC604FA-5D40-34CE-9206-8091010306B7> /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork

    0x7fff40ec6000 -     0x7fff40ec6fff  com.apple.Carbon (158 - 158) <DAF95685-B793-34EB-96EA-3E292A9E3378> /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon

    0x7fff40ec7000 -     0x7fff40ecaffb  com.apple.CommonPanels (1.2.6 - 98) <F1E1C47B-FD1A-30A4-B41B-87BD8B178B56> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels

    0x7fff40ecb000 -     0x7fff411d2ff7  com.apple.HIToolbox (2.1.1 - 916.32) <B2ED8B1C-FC3E-3FA0-8F6D-E7A448E6FAA7> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox

    0x7fff411d3000 -     0x7fff411d6ffb  com.apple.help (1.3.8 - 66) <4392A63F-9B58-3248-BF73-B46AD3744E6E> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help

    0x7fff411d7000 -     0x7fff411dcff7  com.apple.ImageCapture (9.0 - 1529.7) <364EDC6B-6374-31A7-A637-0044B73F8DBF> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture

    0x7fff411dd000 -     0x7fff41271ff3  com.apple.ink.framework (10.9 - 225) <D6503F37-7EBC-32C1-95CC-A35EFC54E7ED> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink

    0x7fff41272000 -     0x7fff4128cfff  com.apple.openscripting (1.7 - 178) <D4A4D130-9C7B-3656-9D58-50F9D09C276E> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting

    0x7fff412ad000 -     0x7fff412aefff  com.apple.print.framework.Print (14.0 - 267.3) <5CD250DF-98AD-30B8-A5D5-47634FF9E74D> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print

    0x7fff412af000 -     0x7fff412b1ff7  com.apple.securityhi (9.0 - 55006) <C5308CBC-6736-31A7-905B-C635C6D43FDE> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI

    0x7fff412b2000 -     0x7fff412b8ff7  com.apple.speech.recognition.framework (6.0.3 - 6.0.3) <1C38B9CB-DD45-3A7B-9D4C-631855A4EE32> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition

    0x7fff413ed000 -     0x7fff414b9fff  com.apple.ColorSync (4.13.0 - 3340) <0618DA46-5A5E-339D-BB2F-ED66A2BFCCF9> /System/Library/Frameworks/ColorSync.framework/Versions/A/ColorSync

    0x7fff41654000 -     0x7fff416e4fff  com.apple.audio.CoreAudio (4.3.0 - 4.3.0) <5845D43B-BBB5-343B-A164-6F9E2C53CFA3> /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio

    0x7fff4174a000 -     0x7fff41775ff7  com.apple.CoreBluetooth (1.0 - 1) <D2F48E3D-79FC-32D7-B281-658EAD2CC50B> /System/Library/Frameworks/CoreBluetooth.framework/Versions/A/CoreBluetooth

    0x7fff41776000 -     0x7fff41b16feb  com.apple.CoreData (120 - 865.2) <90A5058F-A5AF-311A-81CC-B20C2AC9E85E> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData

    0x7fff41b17000 -     0x7fff41c00fff  com.apple.CoreDisplay (101.3 - 101.17.6) <4AE5C221-B8E1-3A4F-91E0-96ED5926E82B> /System/Library/Frameworks/CoreDisplay.framework/Versions/A/CoreDisplay

    0x7fff41c01000 -     0x7fff42050fff  com.apple.CoreFoundation (6.9 - 1555.10) <4A4C87BC-4C8E-392A-ABEE-824D4074C485> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation

    0x7fff42052000 -     0x7fff426dffff  com.apple.CoreGraphics (2.0 - 1245.8.4.8) <FFFFEAF0-14DD-38A3-BD68-AA9AB2C672C1> /System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics

    0x7fff426e1000 -     0x7fff42a06ff7  com.apple.CoreImage (14.0.0 - 700.2.220) <E9E7B27C-C4FD-3AD6-923E-DF7EAE36D1FF> /System/Library/Frameworks/CoreImage.framework/Versions/A/CoreImage

    0x7fff42ebd000 -     0x7fff42ebdfff  com.apple.CoreServices (933 - 933) <B79C910E-93B9-3686-8E72-E0B63083AAE5> /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices

    0x7fff42ebe000 -     0x7fff42f3cffb  com.apple.AE (768 - 768) <E795749D-CE50-3B8C-91A7-8C2618887288> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE

    0x7fff42f3d000 -     0x7fff43215ff7  com.apple.CoreServices.CarbonCore (1178.11 - 1178.11) <9FBE7BFB-3A81-37AC-8E15-E6F7932BBDC0> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore

    0x7fff43216000 -     0x7fff43260ff7  com.apple.DictionaryServices (1.2 - 284.16.3) <D9388630-E7F2-321E-81FF-EBD5F3B47A52> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices

    0x7fff43261000 -     0x7fff43269ffb  com.apple.CoreServices.FSEvents (1239.200.12 - 1239.200.12) <E40A3C4A-79C7-37D8-999B-D1169A06870B> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents

    0x7fff4326a000 -     0x7fff43435ff7  com.apple.LaunchServices (933 - 933) <4614A4B4-C358-3460-9FA7-DF8D6C466806> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices

    0x7fff43436000 -     0x7fff434d8ffb  com.apple.Metadata (10.7.0 - 1191.51) <6B9CCA98-6F68-3908-A7A9-96D3E2AE5968> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata

    0x7fff434d9000 -     0x7fff43524ff7  com.apple.CoreServices.OSServices (933 - 933) <A92C846F-872D-3534-B60E-6CD445A9BAEE> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices

    0x7fff43525000 -     0x7fff43593ff7  com.apple.SearchKit (1.4.0 - 1.4.0) <C6A34D09-9707-3F28-838F-63B59B8A12D5> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit

    0x7fff43594000 -     0x7fff435b8ffb  com.apple.coreservices.SharedFileList (71.27 - 71.27) <B46A15E0-4C10-3616-BE49-58E07EC463FE> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList

    0x7fff438fb000 -     0x7fff43a60fff  com.apple.CoreText (352.0 - 584.24) <5B55B533-F4DE-32CE-8739-16FFFA1A64F8> /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText

    0x7fff43a61000 -     0x7fff43a9efff  com.apple.CoreVideo (1.8 - 0.0) <C7BB7D0F-3AF2-3046-A387-A802BCA52A3A> /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo

    0x7fff43a9f000 -     0x7fff43b35ffb  com.apple.framework.CoreWLAN (13.0 - 1370.8) <19E41424-B956-34DF-AE02-9822308FA3DC> /System/Library/Frameworks/CoreWLAN.framework/Versions/A/CoreWLAN

    0x7fff43db2000 -     0x7fff43db7fff  com.apple.DiskArbitration (2.7 - 2.7) <C53C1905-9BCF-3AE8-8BB3-C8A2C7DB7D25> /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration

    0x7fff43f80000 -     0x7fff4434efff  com.apple.Foundation (6.9 - 1555.10) <0CCAF9AF-F7AF-3174-98D4-6C188B1079CC> /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation

    0x7fff44380000 -     0x7fff443beffb  com.apple.glut (3.6.14 - GLUT-3.6.9) <05941EB3-F84D-3F85-847B-BFB1F9504BBA> /System/Library/Frameworks/GLUT.framework/Versions/A/GLUT

    0x7fff443bf000 -     0x7fff443efff3  com.apple.GSS (4.0 - 2.0) <74ACB1A1-A5A4-3180-AC00-688C94AA4434> /System/Library/Frameworks/GSS.framework/Versions/A/GSS

    0x7fff44508000 -     0x7fff44611ff3  com.apple.Bluetooth (6.0.8 - 6.0.8f6) <6CB8A08E-1154-3333-83CC-2A939AC94562> /System/Library/Frameworks/IOBluetooth.framework/Versions/A/IOBluetooth

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    0x7fff6c3f9000 -     0x7fff6c40efff  libc++abi.dylib (400.17) <BA948A32-9024-3E55-98D4-18E31F6AED25> /usr/lib/libc++abi.dylib

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    0x7fff6c6e4000 -     0x7fff6c6fafff  libcoretls.dylib (155.200.6) <6E68F922-752C-311F-B56D-EE391E6AE1F7> /usr/lib/libcoretls.dylib

    0x7fff6c6fb000 -     0x7fff6c6fcff3  libcoretls_cfhelpers.dylib (155.200.6) <7300BA76-39D2-349E-9FB8-EBE5947A708A> /usr/lib/libcoretls_cfhelpers.dylib

    0x7fff6c89b000 -     0x7fff6ca2bff3  libcrypto.35.dylib (22.200.4) <B4F83304-FB35-3CA5-8949-DE7D75B8A9D9> /usr/lib/libcrypto.35.dylib

    0x7fff6cd73000 -     0x7fff6cdc9ffb  libcups.2.dylib (462.9) <51E06E95-891F-3B88-A8C3-35B514C57239> /usr/lib/libcups.2.dylib

    0x7fff6cf01000 -     0x7fff6cf01fff  libenergytrace.dylib (17.200.1) <D62ED169-B91C-3CCB-ADF5-E66AE4007B51> /usr/lib/libenergytrace.dylib

    0x7fff6cf33000 -     0x7fff6cf38ff7  libgermantok.dylib (17.15.2) <9CBF0658-E83B-32E6-B674-3EE72D22C041> /usr/lib/libgermantok.dylib

    0x7fff6cf39000 -     0x7fff6cf3eff7  libheimdal-asn1.dylib (520.200.17) <58971629-3850-3905-A9A1-09FCF7A32815> /usr/lib/libheimdal-asn1.dylib

    0x7fff6cf6a000 -     0x7fff6d05bff7  libiconv.2.dylib (51.200.6) <3240A278-F537-3EC8-BE0C-983797520A50> /usr/lib/libiconv.2.dylib

    0x7fff6d05c000 -     0x7fff6d2bfffb  libicucore.A.dylib (62107.0.1) <EAE6FC43-3AD2-3A53-9F7A-4E5E5F66D006> /usr/lib/libicucore.A.dylib

    0x7fff6d30c000 -     0x7fff6d30dfff  liblangid.dylib (128.15.1) <F79B6250-C0B1-3E8E-851F-6CA33B4311A3> /usr/lib/liblangid.dylib

    0x7fff6d30e000 -     0x7fff6d326fff  liblzma.5.dylib (10.200.3) <3ADDFA63-F37A-3C9C-91E4-58EE3113B9A1> /usr/lib/liblzma.5.dylib

    0x7fff6d33e000 -     0x7fff6d3eefff  libmecab.1.0.0.dylib (779.15.23) <6A38FCDA-17CE-30C3-AB66-A714CF645384> /usr/lib/libmecab.1.0.0.dylib

    0x7fff6d3ef000 -     0x7fff6d62cfff  libmecabra.dylib (779.15.23) <30E102AA-F3D3-3572-A1AE-1F2287DEF696> /usr/lib/libmecabra.dylib

    0x7fff6d804000 -     0x7fff6db5cfff  libnetwork.dylib (1229.200.109) <AD59D28C-CCB2-3B34-B904-8CCCEB2CF320> /usr/lib/libnetwork.dylib

    0x7fff6dbed000 -     0x7fff6e373fe7  libobjc.A.dylib (750) <2E868147-8818-359E-8CD7-A8B80665928F> /usr/lib/libobjc.A.dylib

    0x7fff6e386000 -     0x7fff6e38affb  libpam.2.dylib (22.200.1) <8C419238-675A-3C41-B8D4-95E391CA630F> /usr/lib/libpam.2.dylib

    0x7fff6e38d000 -     0x7fff6e3c3ff7  libpcap.A.dylib (79.200.4) <5939AB23-B2A9-3C03-B6C1-4F0E5A21D9FC> /usr/lib/libpcap.A.dylib

    0x7fff6e4dd000 -     0x7fff6e4f5ffb  libresolv.9.dylib (65.200.2) <0FEAEB01-B926-37FA-AB47-99BAC481C10B> /usr/lib/libresolv.9.dylib

    0x7fff6e549000 -     0x7fff6e720fe7  libsqlite3.dylib (274.20) <4434B695-BC65-30D6-AFED-1B6488DB3D2E> /usr/lib/libsqlite3.dylib

    0x7fff6e9ad000 -     0x7fff6e9b0ffb  libutil.dylib (51.200.4) <91EE9BF4-FB06-3260-B502-7EFDAD5AF59B> /usr/lib/libutil.dylib

    0x7fff6e9b1000 -     0x7fff6e9befff  libxar.1.dylib (404) <4B4D0206-0B62-3E89-AD07-E7BB9E4DFA68> /usr/lib/libxar.1.dylib

    0x7fff6e9c3000 -     0x7fff6eaa6fff  libxml2.2.dylib (32.6) <BFF70F01-6755-36B9-B7AA-724743E63503> /usr/lib/libxml2.2.dylib

    0x7fff6eaa7000 -     0x7fff6eacfff3  libxslt.1.dylib (16.1) <F191E8B9-7530-30CA-873B-2FA2BF2D6374> /usr/lib/libxslt.1.dylib

    0x7fff6ead0000 -     0x7fff6eae2ffb  libz.1.dylib (70.200.4) <99A3D725-8388-38B4-B66C-5E9006E6F072> /usr/lib/libz.1.dylib

    0x7fff6eb53000 -     0x7fff6eb57ff3  libcache.dylib (81) <FE21A7E9-DBEB-33AC-836B-785AD036ACF4> /usr/lib/system/libcache.dylib

    0x7fff6eb58000 -     0x7fff6eb62ff3  libcommonCrypto.dylib (60118.200.6) <78093D4F-91DB-35C8-981A-13375778B2E7> /usr/lib/system/libcommonCrypto.dylib

    0x7fff6eb63000 -     0x7fff6eb6afff  libcompiler_rt.dylib (63.4) <A4D9CF37-D076-3CE9-95F1-DA89DA1601B6> /usr/lib/system/libcompiler_rt.dylib

    0x7fff6eb6b000 -     0x7fff6eb74ff3  libcopyfile.dylib (146.200.3) <4BCDADBF-79F5-3829-B47D-64DA0D44BCBF> /usr/lib/system/libcopyfile.dylib

    0x7fff6eb75000 -     0x7fff6ebf9fff  libcorecrypto.dylib (602.200.50) <7AEC5B72-0B92-37E8-808B-6732DB714139> /usr/lib/system/libcorecrypto.dylib

    0x7fff6ec7f000 -     0x7fff6ecb9ff7  libdispatch.dylib (1008.200.78) <B8962879-AD55-3CF0-9B0A-5F1D57D1E14B> /usr/lib/system/libdispatch.dylib

    0x7fff6ecba000 -     0x7fff6ece9fff  libdyld.dylib (625.13) <4B16C209-83D4-3817-9B62-C2F7FFB23755> /usr/lib/system/libdyld.dylib

    0x7fff6ecea000 -     0x7fff6eceaffb  libkeymgr.dylib (30) <A73AA788-C35C-3284-BFCA-95B1BBDF0CF3> /usr/lib/system/libkeymgr.dylib

    0x7fff6eceb000 -     0x7fff6ecf7ff7  libkxld.dylib (4903.201.2) <EAF1CF8D-3843-33BE-8126-30994685B8F0> /usr/lib/system/libkxld.dylib

    0x7fff6ecf8000 -     0x7fff6ecf8ff7  liblaunch.dylib (1336.201.2) <43E6698E-155E-3EAE-BAFF-CA5FCB35325C> /usr/lib/system/liblaunch.dylib

    0x7fff6ecf9000 -     0x7fff6ecfefff  libmacho.dylib (917) <17BF7038-9C70-3EE1-9E96-3AE10D49669E> /usr/lib/system/libmacho.dylib

    0x7fff6ecff000 -     0x7fff6ed01ff3  libquarantine.dylib (86.200.11) <C70DA995-0D6E-302C-A15E-F7F03A3857B4> /usr/lib/system/libquarantine.dylib

    0x7fff6ed02000 -     0x7fff6ed03ff3  libremovefile.dylib (45.200.2) <D74A307B-3DC7-3992-B16C-DACB8207BE13> /usr/lib/system/libremovefile.dylib

    0x7fff6ed04000 -     0x7fff6ed1bff3  libsystem_asl.dylib (356.200.4) <EC9D8AD4-E5CB-3765-804A-9E1E9DC045D2> /usr/lib/system/libsystem_asl.dylib

    0x7fff6ed1c000 -     0x7fff6ed1cfff  libsystem_blocks.dylib (73) <26419398-C30C-30F1-B656-A92AFA9560F6> /usr/lib/system/libsystem_blocks.dylib

    0x7fff6ed1d000 -     0x7fff6eda5fff  libsystem_c.dylib (1272.200.26) <3DEEE96E-6DF6-35AD-8654-D69AC26B907B> /usr/lib/system/libsystem_c.dylib

    0x7fff6eda6000 -     0x7fff6eda9ff7  libsystem_configuration.dylib (963.200.27) <02CC3996-B34E-333C-8806-AE2699D34424> /usr/lib/system/libsystem_configuration.dylib

    0x7fff6edaa000 -     0x7fff6edadff7  libsystem_coreservices.dylib (66) <254B6849-2C8F-302C-8616-B8324A11AB30> /usr/lib/system/libsystem_coreservices.dylib

    0x7fff6edae000 -     0x7fff6edb4ffb  libsystem_darwin.dylib (1272.200.26) <974E9EF7-DE72-34B7-B056-0A81C10DF8EB> /usr/lib/system/libsystem_darwin.dylib

    0x7fff6edb5000 -     0x7fff6edbbff7  libsystem_dnssd.dylib (878.200.35) <FFC665AA-B257-35AD-BD8B-32FD42C2EEC1> /usr/lib/system/libsystem_dnssd.dylib

    0x7fff6edbc000 -     0x7fff6ee08ff3  libsystem_info.dylib (517.200.9) <0707C387-D7DE-372E-8FF1-3DE5C91932D6> /usr/lib/system/libsystem_info.dylib

    0x7fff6ee09000 -     0x7fff6ee30ff7  libsystem_kernel.dylib (4903.201.2) <45FAA4C0-D553-34FD-ADF8-884886AE0D2A> /usr/lib/system/libsystem_kernel.dylib

    0x7fff6ee31000 -     0x7fff6ee7cff7  libsystem_m.dylib (3158.200.7) <43D1796B-954F-37D6-B1AC-9D80DF0655A2> /usr/lib/system/libsystem_m.dylib

    0x7fff6ee7d000 -     0x7fff6eea1ff7  libsystem_malloc.dylib (166.200.60) <846F6898-117C-3427-A8FB-3772FFC2410B> /usr/lib/system/libsystem_malloc.dylib

    0x7fff6eea2000 -     0x7fff6eeadffb  libsystem_networkextension.dylib (767.200.40) <F84D5474-4DC1-3E1A-AE00-8CE9593278B4> /usr/lib/system/libsystem_networkextension.dylib

    0x7fff6eeae000 -     0x7fff6eeb5fff  libsystem_notify.dylib (172.200.21) <BCCB222F-DC64-3954-A836-DCCE6659CA5A> /usr/lib/system/libsystem_notify.dylib

    0x7fff6eeb6000 -     0x7fff6eebffef  libsystem_platform.dylib (177.200.16) <B75B04AD-69FE-3ADE-84D2-C17972FC8F49> /usr/lib/system/libsystem_platform.dylib

    0x7fff6eec0000 -     0x7fff6eecafff  libsystem_pthread.dylib (330.201.1) <87A6B136-E423-3B6D-A58A-137F392D7D9D> /usr/lib/system/libsystem_pthread.dylib

    0x7fff6eecb000 -     0x7fff6eeceff7  libsystem_sandbox.dylib (851.201.1) <FBA7E09B-F10F-3424-90EA-B4999B7FB461> /usr/lib/system/libsystem_sandbox.dylib

    0x7fff6eecf000 -     0x7fff6eed1ff7  libsystem_secinit.dylib (30.200.13) <CBEAB62B-F0A0-342F-9878-CADC14A3CB0D> /usr/lib/system/libsystem_secinit.dylib

    0x7fff6eed2000 -     0x7fff6eed9ff7  libsystem_symptoms.dylib (820.207.88) <B6E22FA8-0F7B-36FD-9D99-284056D3CB47> /usr/lib/system/libsystem_symptoms.dylib

    0x7fff6eeda000 -     0x7fff6eeefff7  libsystem_trace.dylib (906.200.86) <7983ED77-18B5-39A5-BE19-AE4F2832ADEA> /usr/lib/system/libsystem_trace.dylib

    0x7fff6eef1000 -     0x7fff6eef6ffb  libunwind.dylib (35.4) <41222EF6-2233-3CF4-947A-15D48CB8C030> /usr/lib/system/libunwind.dylib

    0x7fff6eef7000 -     0x7fff6ef27fff  libxpc.dylib (1336.201.2) <0A8747D1-33AA-37E1-B97A-BA9B95FE4E8C> /usr/lib/system/libxpc.dylib


External Modification Summary:

  Calls made by other processes targeting this process:

    task_for_pid: 0

    thread_create: 0

    thread_set_state: 0

  Calls made by this process:

    task_for_pid: 0

    thread_create: 0

    thread_set_state: 0

  Calls made by all processes on this machine:

    task_for_pid: 97645

    thread_create: 0

    thread_set_state: 0


VM Region Summary:

ReadOnly portion of Libraries: Total=392.4M resident=0K(0%) swapped_out_or_unallocated=392.4M(100%)

Writable regions: Total=123.2M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=123.2M(100%)



                                VIRTUAL   REGION

REGION TYPE                        SIZE    COUNT (non-coalesced)

===========                     =======  =======

Activity Tracing                   256K        2

CG backing stores                  580K        2

CoreGraphics                         8K        2

CoreUI image data                   84K        2

CoreUI image file                  196K        4

Dispatch continuations            24.0M        2

Foundation                           4K        2

Kernel Alloc Once                    8K        2

MALLOC                            85.9M       23

MALLOC guard page                   32K        9

STACK GUARD                       56.0M        5

Stack                             9752K        5

VM_ALLOCATE                        740K       13

__DATA                            36.1M      247

__FONT_DATA                          4K        2

__GLSLBUILTINS                    5176K        2

__LINKEDIT                       216.5M        6

__TEXT                           175.8M      246

__UNICODE                          560K        2

mapped file                       38.9M       11

shared memory                     2716K       10

===========                     =======  =======

TOTAL                            653.0M      578


Model: MacBookPro15,1, BootROM 220.200.252.0.0 (iBridge: 16.16.375.0.0,0), 6 processors, Intel Core i7, 2.6 GHz, 16 GB, SMC

Graphics: kHW_IntelUHDGraphics630Item, Intel UHD Graphics 630, Built-In

Graphics: kHW_AMDRadeonPro560XItem, Radeon Pro 560X, PCIe

Memory Module: BANK 0/ChannelA-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1 8ATF1G64HZ-2G6E1

Memory Module: BANK 2/ChannelB-DIMM0, 8 GB, DDR4, 2400 MHz, Micron, 8ATF1G64HZ-2G6E1 8ATF1G64HZ-2G6E1

AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x7BF), wl0: Jul 24 2018 08:46:21 version 9.130.86.2.32.6.17 FWID 01-a7e14b32

Bluetooth: Version 6.0.8f6, 3 services, 27 devices, 1 incoming serial ports

Network Service: Wi-Fi, AirPort, en0

USB Device: USB 3.1 Bus

USB Device: iBridge Bus

USB Device: iBridge DFR brightness

USB Device: iBridge Display

USB Device: Apple Internal Keyboard / Trackpad

USB Device: Headset

USB Device: iBridge ALS

USB Device: iBridge FaceTime HD Camera (Built-in)

USB Device: iBridge

Thunderbolt Bus: MacBook Pro, Apple Inc., 30.2

Thunderbolt Bus: MacBook Pro, Apple Inc., 30.2



________________________________
From: Zhicheng Geng <zhi...@ut...>
Sent: Thursday, November 1, 2018 5:58 PM
To: Luke Decker; Karl Schleicher
Cc: rsf...@li...
Subject: Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

Hi,

The current system version of my Mac is macOS Mojave and I reinstalled the latest version Madagascar last night successfully.

Luke, can you send the error message so that I can try to find out why the configure file doesn't work?

And regarding the problem Karl is having right now, I think you aren't using the latest Madagascar.
The line #include <vecLib/clapack.h> has already been commented since Sep. 6.

Currently, the sfpen can't work with pipe, but you can use sfpen to open a vpl file.
If it shows black, you can try fullscreen. It works on my Mac.

Zhicheng

On Nov 1, 2018, at 15:17, Luke Decker <dec...@gm...<mailto:dec...@gm...>> wrote:

Interesting.  I'm getting more problems with the Mac too - I have noticed that the configure file no longer recognizes numpy either.  Are you having this problem as well?
Luke

On Nov 1, 2018, at 3:14 PM, Karl Schleicher <k_s...@ho...<mailto:k_s...@ho...>> wrote:

OK.  Bill woke men up, but I do no have much to add.  Here is the story of my recent story trying to build on a Mac.

I purchased a new Mac in August and tried to install Madagascar.  I followed the directions at reproduciblity.org<https://nam03.safelinks.protection.outlook.com/?url=http%3A%2F%2Freproduciblity.org%2F&data=02%7C01%7C%7Cdc6b79d8838f4f2aff8208d6404d9cbc%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636767099411195694&sdata=GhvnIdaEDg74vpWZTAdeKdr9mYNNaASzW%2F%2BxLF23VsQ%3D&reserved=0> in Advanced installation.  Everything build pretty easily, but sfpen did not work. This is test and some print from the terminal:
sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" | sfpen
produces the error message:
Abort trap: 6
and a "Problem Report for sfpen" window appears that says:
sfpen quite unexpectantly.
click Reopen to open the application again.  This report will be sent to Apple automaticly

Problem is in sfpen. I plotted the .vpl from sfwiggle with this sequence:

sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" > spike.vpl
vpconvert spike.vpl format=gif
open spike.gif



In the past when I had problem with sfpen it was the program was not created because X11 libraries were missing.  I tried a few things, posted to ref-devl and rsf-users but did not get help.

Last week I decided to installed mojave.  I do not remember the error message, but decided I need to update Xcode by reinstalling from the App Store.  I followed the Advanced installation instructions at reproducibility.org<https://nam03.safelinks.protection.outlook.com/?url=http%3A%2F%2Freproducibility.org%2F&data=02%7C01%7C%7Cdc6b79d8838f4f2aff8208d6404d9cbc%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636767099411195694&sdata=Mvsk5lFiYWBRaxFk6qCD0wckcZiC%2FixVYlfWhdLPpaE%3D&reserved=0>.  I opened Xcode and installed the command line tools.  I reran ./configure and ran make install and get a message:
clang -o build/pens/main/gdpen.o -c -O2 -DGIFANIM -Ibuild/include -I/opt/local/include build/pens/main/gdpen.c
In file included from build/pens/main/gdpen.c:23:
In file included from build/pens/main/../include/extern.h:4:
build/include/rsf.h:5504:10: fatal error: 'vecLib/clapack.h' file not found
#include <vecLib/clapack.h>

I tried again, running all the steps in the advanced installation for Mac in reproducibility.org<https://nam03.safelinks.protection.outlook.com/?url=http%3A%2F%2Freproducibility.org%2F&data=02%7C01%7C%7Cdc6b79d8838f4f2aff8208d6404d9cbc%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636767099411195694&sdata=Mvsk5lFiYWBRaxFk6qCD0wckcZiC%2FixVYlfWhdLPpaE%3D&reserved=0>.  Tried googling.  I have a copy of clapack.h, but not found by the compiler. I also tried gcc, which fails the same way.

That is where I am today.  Still using my old Mac and my Linux tower.  I'm interested in some tips.

Karl
________________________________
From: symes <sy...@ri...<mailto:sy...@ri...>>
Sent: Tuesday, October 30, 2018 3:17 PM
To: rsf...@li...<mailto:rsf...@li...>
Subject: Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

I have heard something like this from Karl. Have been putting off
updating to Mojave for precisely this reason.

Quoting Luke Decker <dec...@gm...<mailto:dec...@gm...>>:

> When I try to install Madagascar on my Mac, I get the following
> issues towards the end of compilation :
>
> /opt/local/bin/install_name_tool -change build/api/c/libdrsf.dyli...
 
[truncated message content]

Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[Luke D. <dec...@gm...>]

Here is the error from the last good program compilation:

gcc -o build/plot/lib/vplot.os -c -O2 -x c -std=gnu99 -Wall -pedantic -fPIC -Ibuild/include -I/opt/local/include build/plot/lib/vplot.c
gcc -o build/plot/lib/libdrsfplot.dylib -framework Accelerate -dynamiclib build/plot/lib/axis.os build/plot/lib/coltab.os build/plot/lib/contour.os build/plot/lib/gainpar.os build/plot/lib/plot.os build/plot/lib/stdplot.os build/plot/lib/vplot.os -Lbuild/lib -L/opt/local/lib -ldrsf -lm -lmx -lfftw3f -lfftw3f_threads -lfftw3_threads
ld: warning: text-based stub file /System/Library/Frameworks//Accelerate.framework/Accelerate.tbd and library file /System/Library/Frameworks//Accelerate.framework/Accelerate are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks//vecLib.framework/Versions/A/vecLib.tbd and library file /System/Library/Frameworks//vecLib.framework/Versions/A/vecLib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparseBLAS.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparseBLAS.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libQuadrature.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libQuadrature.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBNNS.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBNNS.dylib are out of sync. Falling back to library file for linking.
ld: warning: text-based stub file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.tbd and library file /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.dylib are out of sync. Falling back to library file for linking.
Install file: "build/plot/lib/libdrsfplot.dylib" as "/Users/luke/madagascar/lib/libdrsfplot.dylib"
/opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib /Users/luke/madagascar/lib/libdrsf.dylib /Users/luke/madagascar/lib/libdrsfplot.dylib
/opt/local/bin/install_name_tool: object: /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object (unknown load command 8)
scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
scons: building terminated because of errors.
make: *** [install] Error 2


Thanks,
Luke


> On Nov 1, 2018, at 8:32 PM, Luke Decker <dec...@gm...> wrote:
> 
> Completing a MacPorts Migration fixes the numpy issue:
> 
> https://trac.macports.org/wiki/Migration <https://trac.macports.org/wiki/Migration>
> 
> However, the original problem of installation not completing remains (and is actually amplified — I lost the env.sh file when reinstalling MacPorts so now the Mac doesn’t recognize Madagascar programs.
> 
> Thanks,
> Luke
> 
>> On Nov 1, 2018, at 5:58 PM, Zhicheng Geng <zhi...@ut... <mailto:zhi...@ut...>> wrote:
>> 
>> Hi,
>> 
>> The current system version of my Mac is macOS Mojave and I reinstalled the latest version Madagascar last night successfully.
>> 
>> Luke, can you send the error message so that I can try to find out why the configure file doesn’t work?
>> 
>> And regarding the problem Karl is having right now, I think you aren't using the latest Madagascar.
>> The line #include <vecLib/clapack.h> has already been commented since Sep. 6.
>> 
>> Currently, the sfpen can’t work with pipe, but you can use sfpen to open a vpl file.
>> If it shows black, you can try fullscreen. It works on my Mac.
>> 
>> Zhicheng
>> 
>>> On Nov 1, 2018, at 15:17, Luke Decker <dec...@gm... <mailto:dec...@gm...>> wrote:
>>> 
>>> Interesting.  I’m getting more problems with the Mac too — I have noticed that the configure file no longer recognizes numpy either.  Are you having this problem as well?
>>> Luke
>>> 
>>>> On Nov 1, 2018, at 3:14 PM, Karl Schleicher <k_s...@ho... <mailto:k_s...@ho...>> wrote:
>>>> 
>>>> OK.  Bill woke men up, but I do no have much to add.  Here is the story of my recent story trying to build on a Mac.
>>>> 
>>>> I purchased a new Mac in August and tried to install Madagascar.  I followed the directions at reproduciblity.org <http://reproduciblity.org/> in Advanced installation.  Everything build pretty easily, but sfpen did not work. This is test and some print from the terminal:
>>>> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" |
>>>> sfpen
>>>> produces the error message:
>>>> Abort trap: 6
>>>> and a "Problem Report for sfpen" window appears that says:
>>>> sfpen quite unexpectantly.
>>>> click Reopen to open the application again.  This report will be sent to Apple automaticly
>>>> 
>>>> Problem is in sfpen. I plotted the .vpl from sfwiggle with this sequence:
>>>> 
>>>> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" > spike.vpl
>>>> vpconvert spike.vpl format=gif
>>>> open spike.gif
>>>> 
>>>> 
>>>> In the past when I had problem with sfpen it was the program was not created because X11 libraries were missing.  I tried a few things, posted to ref-devl and rsf-users but did not get help.
>>>> 
>>>> Last week I decided to installed mojave.  I do not remember the error message, but decided I need to update Xcode by reinstalling from the App Store.  I followed the Advanced installation instructions at reproducibility.org <http://reproducibility.org/>.  I opened Xcode and installed the command line tools.  I reran ./configure and ran make install and get a message:
>>>> clang -o build/pens/main/gdpen.o -c -O2 -DGIFANIM -Ibuild/include -I/opt/local/include build/pens/main/gdpen.c
>>>> In file included from build/pens/main/gdpen.c:23:
>>>> In file included from build/pens/main/../include/extern.h:4:
>>>> build/include/rsf.h:5504:10: fatal error: 'vecLib/clapack.h' file not found
>>>> #include <vecLib/clapack.h>
>>>> 
>>>> I tried again, running all the steps in the advanced installation for Mac in reproducibility.org <http://reproducibility.org/>.  Tried googling.  I have a copy of clapack.h, but not found by the compiler. I also tried gcc, which fails the same way.
>>>> 
>>>> That is where I am today.  Still using my old Mac and my Linux tower.  I'm interested in some tips.
>>>> 
>>>> Karl
>>>> From: symes <sy...@ri... <mailto:sy...@ri...>>
>>>> Sent: Tuesday, October 30, 2018 3:17 PM
>>>> To: rsf...@li... <mailto:rsf...@li...>
>>>> Subject: Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os
>>>>  
>>>> I have heard something like this from Karl. Have been putting off  
>>>> updating to Mojave for precisely this reason.
>>>> 
>>>> Quoting Luke Decker <dec...@gm... <mailto:dec...@gm...>>:
>>>> 
>>>> > When I try to install Madagascar on my Mac, I get the following  
>>>> > issues towards the end of compilation :
>>>> >
>>>> > /opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib  
>>>> > /Users/luke/madagascar/lib/libdrsf.dylib  
>>>> > /Users/luke/madagascar/lib/libdrsfplot.dylib
>>>> > /opt/local/bin/install_name_tool: object:  
>>>> > /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object  
>>>> > (unknown load command 8)
>>>> > scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
>>>> > scons: building terminated because of errors.
>>>> > make: *** [install] Error 2
>>>> >
>>>> >
>>>> > I recently updated to MojaveOS.  Could this be causing the issue?   
>>>> > Is anyone else having this problem?
>>>> >
>>>> > Thanks,
>>>> > Luke
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> RSF-devel mailing list
>>>> RSF...@li... <mailto:RSF...@li...>
>>>> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Frsf-devel&amp;data=02%7C01%7C%7C39f29d69041d4b4a95c608d63ea7d97e%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636765287954190763&amp;sdata=L2goocZO17gb8IKaJc%2BY9AKCAnIsuxyOuBhgsg%2BdyNY%3D&amp;reserved=0 <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Frsf-devel&amp;data=02%7C01%7C%7C39f29d69041d4b4a95c608d63ea7d97e%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636765287954190763&amp;sdata=L2goocZO17gb8IKaJc%2BY9AKCAnIsuxyOuBhgsg%2BdyNY%3D&amp;reserved=0>
>>>> _______________________________________________
>>>> RSF-devel mailing list
>>>> RSF...@li... <mailto:RSF...@li...>
>>>> https://lists.sourceforge.net/lists/listinfo/rsf-devel <https://lists.sourceforge.net/lists/listinfo/rsf-devel>
>>> 
>>> _______________________________________________
>>> RSF-devel mailing list
>>> RSF...@li... <mailto:RSF...@li...>
>>> https://lists.sourceforge.net/lists/listinfo/rsf-devel <https://lists.sourceforge.net/lists/listinfo/rsf-devel>
>> 
> 

Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[Luke D. <dec...@gm...>]

Completing a MacPorts Migration fixes the numpy issue:

https://trac.macports.org/wiki/Migration <https://trac.macports.org/wiki/Migration>

However, the original problem of installation not completing remains (and is actually amplified — I lost the env.sh file when reinstalling MacPorts so now the Mac doesn’t recognize Madagascar programs.

Thanks,
Luke

> On Nov 1, 2018, at 5:58 PM, Zhicheng Geng <zhi...@ut...> wrote:
> 
> Hi,
> 
> The current system version of my Mac is macOS Mojave and I reinstalled the latest version Madagascar last night successfully.
> 
> Luke, can you send the error message so that I can try to find out why the configure file doesn’t work?
> 
> And regarding the problem Karl is having right now, I think you aren't using the latest Madagascar.
> The line #include <vecLib/clapack.h> has already been commented since Sep. 6.
> 
> Currently, the sfpen can’t work with pipe, but you can use sfpen to open a vpl file.
> If it shows black, you can try fullscreen. It works on my Mac.
> 
> Zhicheng
> 
>> On Nov 1, 2018, at 15:17, Luke Decker <dec...@gm... <mailto:dec...@gm...>> wrote:
>> 
>> Interesting.  I’m getting more problems with the Mac too — I have noticed that the configure file no longer recognizes numpy either.  Are you having this problem as well?
>> Luke
>> 
>>> On Nov 1, 2018, at 3:14 PM, Karl Schleicher <k_s...@ho... <mailto:k_s...@ho...>> wrote:
>>> 
>>> OK.  Bill woke men up, but I do no have much to add.  Here is the story of my recent story trying to build on a Mac.
>>> 
>>> I purchased a new Mac in August and tried to install Madagascar.  I followed the directions at reproduciblity.org <http://reproduciblity.org/> in Advanced installation.  Everything build pretty easily, but sfpen did not work. This is test and some print from the terminal:
>>> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" |
>>> sfpen
>>> produces the error message:
>>> Abort trap: 6
>>> and a "Problem Report for sfpen" window appears that says:
>>> sfpen quite unexpectantly.
>>> click Reopen to open the application again.  This report will be sent to Apple automaticly
>>> 
>>> Problem is in sfpen. I plotted the .vpl from sfwiggle with this sequence:
>>> 
>>> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" > spike.vpl
>>> vpconvert spike.vpl format=gif
>>> open spike.gif
>>> 
>>> 
>>> In the past when I had problem with sfpen it was the program was not created because X11 libraries were missing.  I tried a few things, posted to ref-devl and rsf-users but did not get help.
>>> 
>>> Last week I decided to installed mojave.  I do not remember the error message, but decided I need to update Xcode by reinstalling from the App Store.  I followed the Advanced installation instructions at reproducibility.org <http://reproducibility.org/>.  I opened Xcode and installed the command line tools.  I reran ./configure and ran make install and get a message:
>>> clang -o build/pens/main/gdpen.o -c -O2 -DGIFANIM -Ibuild/include -I/opt/local/include build/pens/main/gdpen.c
>>> In file included from build/pens/main/gdpen.c:23:
>>> In file included from build/pens/main/../include/extern.h:4:
>>> build/include/rsf.h:5504:10: fatal error: 'vecLib/clapack.h' file not found
>>> #include <vecLib/clapack.h>
>>> 
>>> I tried again, running all the steps in the advanced installation for Mac in reproducibility.org <http://reproducibility.org/>.  Tried googling.  I have a copy of clapack.h, but not found by the compiler. I also tried gcc, which fails the same way.
>>> 
>>> That is where I am today.  Still using my old Mac and my Linux tower.  I'm interested in some tips.
>>> 
>>> Karl
>>> From: symes <sy...@ri... <mailto:sy...@ri...>>
>>> Sent: Tuesday, October 30, 2018 3:17 PM
>>> To: rsf...@li... <mailto:rsf...@li...>
>>> Subject: Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os
>>>  
>>> I have heard something like this from Karl. Have been putting off  
>>> updating to Mojave for precisely this reason.
>>> 
>>> Quoting Luke Decker <dec...@gm... <mailto:dec...@gm...>>:
>>> 
>>> > When I try to install Madagascar on my Mac, I get the following  
>>> > issues towards the end of compilation :
>>> >
>>> > /opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib  
>>> > /Users/luke/madagascar/lib/libdrsf.dylib  
>>> > /Users/luke/madagascar/lib/libdrsfplot.dylib
>>> > /opt/local/bin/install_name_tool: object:  
>>> > /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object  
>>> > (unknown load command 8)
>>> > scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
>>> > scons: building terminated because of errors.
>>> > make: *** [install] Error 2
>>> >
>>> >
>>> > I recently updated to MojaveOS.  Could this be causing the issue?   
>>> > Is anyone else having this problem?
>>> >
>>> > Thanks,
>>> > Luke
>>> 
>>> 
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> RSF-devel mailing list
>>> RSF...@li... <mailto:RSF...@li...>
>>> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Frsf-devel&amp;data=02%7C01%7C%7C39f29d69041d4b4a95c608d63ea7d97e%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636765287954190763&amp;sdata=L2goocZO17gb8IKaJc%2BY9AKCAnIsuxyOuBhgsg%2BdyNY%3D&amp;reserved=0 <https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Frsf-devel&amp;data=02%7C01%7C%7C39f29d69041d4b4a95c608d63ea7d97e%7C84df9e7fe9f640afb435aaaaaaaaaaaa%7C1%7C0%7C636765287954190763&amp;sdata=L2goocZO17gb8IKaJc%2BY9AKCAnIsuxyOuBhgsg%2BdyNY%3D&amp;reserved=0>
>>> _______________________________________________
>>> RSF-devel mailing list
>>> RSF...@li... <mailto:RSF...@li...>
>>> https://lists.sourceforge.net/lists/listinfo/rsf-devel <https://lists.sourceforge.net/lists/listinfo/rsf-devel>
>> 
>> _______________________________________________
>> RSF-devel mailing list
>> RSF...@li... <mailto:RSF...@li...>
>> https://lists.sourceforge.net/lists/listinfo/rsf-devel
> 

Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[Zhicheng G. <zhi...@ut...>]

Hi,

The current system version of my Mac is macOS Mojave and I reinstalled the latest version Madagascar last night successfully.

Luke, can you send the error message so that I can try to find out why the configure file doesn’t work?

And regarding the problem Karl is having right now, I think you aren't using the latest Madagascar.
The line #include <vecLib/clapack.h> has already been commented since Sep. 6.

Currently, the sfpen can’t work with pipe, but you can use sfpen to open a vpl file.
If it shows black, you can try fullscreen. It works on my Mac.

Zhicheng

> On Nov 1, 2018, at 15:17, Luke Decker <dec...@gm...> wrote:
> 
> Interesting.  I’m getting more problems with the Mac too — I have noticed that the configure file no longer recognizes numpy either.  Are you having this problem as well?
> Luke
> 
>> On Nov 1, 2018, at 3:14 PM, Karl Schleicher <k_s...@ho... <mailto:k_s...@ho...>> wrote:
>> 
>> OK.  Bill woke men up, but I do no have much to add.  Here is the story of my recent story trying to build on a Mac.
>> 
>> I purchased a new Mac in August and tried to install Madagascar.  I followed the directions at reproduciblity.org <http://reproduciblity.org/> in Advanced installation.  Everything build pretty easily, but sfpen did not work. This is test and some print from the terminal:
>> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" |
>> sfpen
>> produces the error message:
>> Abort trap: 6
>> and a "Problem Report for sfpen" window appears that says:
>> sfpen quite unexpectantly.
>> click Reopen to open the application again.  This report will be sent to Apple automaticly
>> 
>> Problem is in sfpen. I plotted the .vpl from sfwiggle with this sequence:
>> 
>> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" > spike.vpl
>> vpconvert spike.vpl format=gif
>> open spike.gif
>> 
>> 
>> In the past when I had problem with sfpen it was the program was not created because X11 libraries were missing.  I tried a few things, posted to ref-devl and rsf-users but did not get help.
>> 
>> Last week I decided to installed mojave.  I do not remember the error message, but decided I need to update Xcode by reinstalling from the App Store.  I followed the Advanced installation instructions at reproducibility.org <http://reproducibility.org/>.  I opened Xcode and installed the command line tools.  I reran ./configure and ran make install and get a message:
>> clang -o build/pens/main/gdpen.o -c -O2 -DGIFANIM -Ibuild/include -I/opt/local/include build/pens/main/gdpen.c
>> In file included from build/pens/main/gdpen.c:23:
>> In file included from build/pens/main/../include/extern.h:4:
>> build/include/rsf.h:5504:10: fatal error: 'vecLib/clapack.h' file not found
>> #include <vecLib/clapack.h>
>> 
>> I tried again, running all the steps in the advanced installation for Mac in reproducibility.org <http://reproducibility.org/>.  Tried googling.  I have a copy of clapack.h, but not found by the compiler. I also tried gcc, which fails the same way.
>> 
>> That is where I am today.  Still using my old Mac and my Linux tower.  I'm interested in some tips.
>> 
>> Karl
>> From: symes <sy...@ri... <mailto:sy...@ri...>>
>> Sent: Tuesday, October 30, 2018 3:17 PM
>> To: rsf...@li... <mailto:rsf...@li...>
>> Subject: Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os
>>  
>> I have heard something like this from Karl. Have been putting off  
>> updating to Mojave for precisely this reason.
>> 
>> Quoting Luke Decker <dec...@gm... <mailto:dec...@gm...>>:
>> 
>> > When I try to install Madagascar on my Mac, I get the following  
>> > issues towards the end of compilation :
>> >
>> > /opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib  
>> > /Users/luke/madagascar/lib/libdrsf.dylib  
>> > /Users/luke/madagascar/lib/libdrsfplot.dylib
>> > /opt/local/bin/install_name_tool: object:  
>> > /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object  
>> > (unknown load command 8)
>> > scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
>> > scons: building terminated because of errors.
>> > make: *** [install] Error 2
>> >
>> >
>> > I recently updated to MojaveOS.  Could this be causing the issue?   
>> > Is anyone else having this problem?
>> >
>> > Thanks,
>> > Luke
>> 
>> 
>> 
>> 
>> 
>> _______________________________________________
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>> RSF...@li... <mailto:RSF...@li...>
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>> RSF...@li... <mailto:RSF...@li...>
>> https://lists.sourceforge.net/lists/listinfo/rsf-devel <https://lists.sourceforge.net/lists/listinfo/rsf-devel>
> 
> _______________________________________________
> RSF-devel mailing list
> RSF...@li...
> https://lists.sourceforge.net/lists/listinfo/rsf-devel

Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[Luke D. <dec...@gm...>]

Interesting.  I’m getting more problems with the Mac too — I have noticed that the configure file no longer recognizes numpy either.  Are you having this problem as well?
Luke

> On Nov 1, 2018, at 3:14 PM, Karl Schleicher <k_s...@ho...> wrote:
> 
> OK.  Bill woke men up, but I do no have much to add.  Here is the story of my recent story trying to build on a Mac.
> 
> I purchased a new Mac in August and tried to install Madagascar.  I followed the directions at reproduciblity.org <http://reproduciblity.org/> in Advanced installation.  Everything build pretty easily, but sfpen did not work. This is test and some print from the terminal:
> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" |
> sfpen
> produces the error message:
> Abort trap: 6
> and a "Problem Report for sfpen" window appears that says:
> sfpen quite unexpectantly.
> click Reopen to open the application again.  This report will be sent to Apple automaticly
> 
> Problem is in sfpen. I plotted the .vpl from sfwiggle with this sequence:
> 
> sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" > spike.vpl
> vpconvert spike.vpl format=gif
> open spike.gif
> 
> 
> In the past when I had problem with sfpen it was the program was not created because X11 libraries were missing.  I tried a few things, posted to ref-devl and rsf-users but did not get help.
> 
> Last week I decided to installed mojave.  I do not remember the error message, but decided I need to update Xcode by reinstalling from the App Store.  I followed the Advanced installation instructions at reproducibility.org <http://reproducibility.org/>.  I opened Xcode and installed the command line tools.  I reran ./configure and ran make install and get a message:
> clang -o build/pens/main/gdpen.o -c -O2 -DGIFANIM -Ibuild/include -I/opt/local/include build/pens/main/gdpen.c
> In file included from build/pens/main/gdpen.c:23:
> In file included from build/pens/main/../include/extern.h:4:
> build/include/rsf.h:5504:10: fatal error: 'vecLib/clapack.h' file not found
> #include <vecLib/clapack.h>
> 
> I tried again, running all the steps in the advanced installation for Mac in reproducibility.org <http://reproducibility.org/>.  Tried googling.  I have a copy of clapack.h, but not found by the compiler. I also tried gcc, which fails the same way.
> 
> That is where I am today.  Still using my old Mac and my Linux tower.  I'm interested in some tips.
> 
> Karl
> From: symes <sy...@ri... <mailto:sy...@ri...>>
> Sent: Tuesday, October 30, 2018 3:17 PM
> To: rsf...@li... <mailto:rsf...@li...>
> Subject: Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os
>  
> I have heard something like this from Karl. Have been putting off  
> updating to Mojave for precisely this reason.
> 
> Quoting Luke Decker <dec...@gm... <mailto:dec...@gm...>>:
> 
> > When I try to install Madagascar on my Mac, I get the following  
> > issues towards the end of compilation :
> >
> > /opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib  
> > /Users/luke/madagascar/lib/libdrsf.dylib  
> > /Users/luke/madagascar/lib/libdrsfplot.dylib
> > /opt/local/bin/install_name_tool: object:  
> > /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object  
> > (unknown load command 8)
> > scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
> > scons: building terminated because of errors.
> > make: *** [install] Error 2
> >
> >
> > I recently updated to MojaveOS.  Could this be causing the issue?   
> > Is anyone else having this problem?
> >
> > Thanks,
> > Luke
> 
> 
> 
> 
> 
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> _______________________________________________
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> RSF...@li... <mailto:RSF...@li...>
> https://lists.sourceforge.net/lists/listinfo/rsf-devel <https://lists.sourceforge.net/lists/listinfo/rsf-devel>

Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[Karl S. <k_s...@ho...>]

OK.  Bill woke men up, but I do no have much to add.  Here is the story of my recent story trying to build on a Mac.


I purchased a new Mac in August and tried to install Madagascar.  I followed the directions at reproduciblity.org in Advanced installation.  Everything build pretty easily, but sfpen did not work. This is test and some print from the terminal:

sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" | sfpen

produces the error message:

Abort trap: 6

and a "Problem Report for sfpen" window appears that says:

sfpen quite unexpectantly.

click Reopen to open the application again.  This report will be sent to Apple automaticly


Problem is in sfpen. I plotted the .vpl from sfwiggle with this sequence:


sfspike n1=1000 k1=300 | sfbandpass fhi=2 phase=y | sfwiggle clip=0.02 title="Welcome to Madagascar" > spike.vpl

vpconvert spike.vpl format=gif

open spike.gif



In the past when I had problem with sfpen it was the program was not created because X11 libraries were missing.  I tried a few things, posted to ref-devl and rsf-users but did not get help.

Last week I decided to installed mojave.  I do not remember the error message, but decided I need to update Xcode by reinstalling from the App Store.  I followed the Advanced installation instructions at reproducibility.org.  I opened Xcode and installed the command line tools.  I reran ./configure and ran make install and get a message:

clang -o build/pens/main/gdpen.o -c -O2 -DGIFANIM -Ibuild/include -I/opt/local/include build/pens/main/gdpen.c

In file included from build/pens/main/gdpen.c:23:

In file included from build/pens/main/../include/extern.h:4:

build/include/rsf.h:5504:10: fatal error: 'vecLib/clapack.h' file not found

#include <vecLib/clapack.h>


I tried again, running all the steps in the advanced installation for Mac in reproducibility.org.  Tried googling.  I have a copy of clapack.h, but not found by the compiler. I also tried gcc, which fails the same way.

That is where I am today.  Still using my old Mac and my Linux tower.  I'm interested in some tips.

Karl
________________________________
From: symes <sy...@ri...>
Sent: Tuesday, October 30, 2018 3:17 PM
To: rsf...@li...
Subject: Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

I have heard something like this from Karl. Have been putting off
updating to Mojave for precisely this reason.

Quoting Luke Decker <dec...@gm...>:

> When I try to install Madagascar on my Mac, I get the following
> issues towards the end of compilation :
>
> /opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib
> /Users/luke/madagascar/lib/libdrsf.dylib
> /Users/luke/madagascar/lib/libdrsfplot.dylib
> /opt/local/bin/install_name_tool: object:
> /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object
> (unknown load command 8)
> scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
> scons: building terminated because of errors.
> make: *** [install] Error 2
>
>
> I recently updated to MojaveOS.  Could this be causing the issue?
> Is anyone else having this problem?
>
> Thanks,
> Luke





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Re: [rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[symes <sy...@ri...>]

I have heard something like this from Karl. Have been putting off  
updating to Mojave for precisely this reason.

Quoting Luke Decker <dec...@gm...>:

> When I try to install Madagascar on my Mac, I get the following  
> issues towards the end of compilation :
>
> /opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib  
> /Users/luke/madagascar/lib/libdrsf.dylib  
> /Users/luke/madagascar/lib/libdrsfplot.dylib
> /opt/local/bin/install_name_tool: object:  
> /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object  
> (unknown load command 8)
> scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
> scons: building terminated because of errors.
> make: *** [install] Error 2
>
>
> I recently updated to MojaveOS.  Could this be causing the issue?   
> Is anyone else having this problem?
>
> Thanks,
> Luke

[rsf-devel] Installation errors when running make install within RSFSRC on Mac os

[Luke D. <dec...@gm...>]

When I try to install Madagascar on my Mac, I get the following issues towards the end of compilation :

/opt/local/bin/install_name_tool -change build/api/c/libdrsf.dylib /Users/luke/madagascar/lib/libdrsf.dylib /Users/luke/madagascar/lib/libdrsfplot.dylib
/opt/local/bin/install_name_tool: object: /Users/luke/madagascar/lib/libdrsfplot.dylib malformed object (unknown load command 8)
scons: *** [/Users/luke/madagascar/lib/libdrsfplot.dylib] Error 1
scons: building terminated because of errors.
make: *** [install] Error 2


I recently updated to MojaveOS.  Could this be causing the issue?  Is anyone else having this problem?

Thanks,
Luke