Recent changes to Home

Home modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:31 -0000

--- v4
+++ v5
@@ -13,5 +13,7 @@
 ######[ROP output details] (https://github.com/smangul1/rop/wiki/ROP-output-details)
 ######[How to map reads and save unmapped reads?] (https://github.com/smangul1/rop/wiki/How-to-map-reads-and-save-unmapped-reads)
 ######[Source of every last read](https://github.com/smangul1/rop/wiki/Source-of-every-last-read)
+######[Additional options](https://github.com/smangul1/rop/wiki/Additional-options)
+

 Please do not hesitate to contact us (smangul@ucla.edu) if you have any comments, suggestions, or clarification requests regarding the tutorial or if you would like to contribute to this resource.

Home modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:28 -0000

--- v3
+++ v4
@@ -9,7 +9,7 @@
 ######[How to install ROP?] (https://github.com/smangul1/rop/wiki/How-to-install-ROP%3F)
 ######[Unix Tutorial] (https://github.com/smangul1/rop/wiki/UNIX-Tutorial)
 ######[Get started] (https://github.com/smangul1/rop/wiki/Get-started)
-######[ROP analysis: one RNA-Seq sample] (https://github.com/smangul1/rop/wiki/ROP-analysis:--one-RNA-Seq-sampe)
+######[ROP analysis: one RNA-Seq sample] (https://github.com/smangul1/rop/wiki/ROP-analysis:--one-RNA-Seq-sample)
 ######[ROP output details] (https://github.com/smangul1/rop/wiki/ROP-output-details)
 ######[How to map reads and save unmapped reads?] (https://github.com/smangul1/rop/wiki/How-to-map-reads-and-save-unmapped-reads)
 ######[Source of every last read](https://github.com/smangul1/rop/wiki/Source-of-every-last-read)

Home modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:28 -0000

--- v2
+++ v3
@@ -1,6 +1,6 @@
 #ROP Tutorial

-This tutorial focuses on performing a comprehensive analysis of unmapped reads to profile repeats, circRNAs, gene fusions, trans-splicing events, recombined B/T-cell receptor sequences and microbial communities. This tutorial is a step-by-step description of the ROP (Read Origin Protocol) pipeline to explore the unmapped reads left from you study.
+This tutorial focuses on performing a comprehensive analysis of unmapped reads to profile repeats, circRNAs, gene fusions, trans-splicing events, recombined B/T-cell receptor sequences and microbial communities. This tutorial is a step-by-step description of the ROP (Read Origin Protocol) pipeline to explore the unmapped reads left from your study.

 We assume you have a basic knowledge of sequence analysis and of Unix-based operating systems (although you should be able to run the pipeline on MacOS, some commands may require modification). If you have limited knowledge of UNIX, we encourage you to follow the [Unix Tutorial](https://github.com/smangul1/rop/wiki/UNIX-Tutorial).

Home modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:27 -0000

--- v1
+++ v2
@@ -1,3 +1,5 @@
+#ROP Tutorial
+
 This tutorial focuses on performing a comprehensive analysis of unmapped reads to profile repeats, circRNAs, gene fusions, trans-splicing events, recombined B/T-cell receptor sequences and microbial communities. This tutorial is a step-by-step description of the ROP (Read Origin Protocol) pipeline to explore the unmapped reads left from you study.

 We assume you have a basic knowledge of sequence analysis and of Unix-based operating systems (although you should be able to run the pipeline on MacOS, some commands may require modification). If you have limited knowledge of UNIX, we encourage you to follow the [Unix Tutorial](https://github.com/smangul1/rop/wiki/UNIX-Tutorial).

Home modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:27 -0000

This tutorial focuses on performing a comprehensive analysis of unmapped reads to profile repeats, circRNAs, gene fusions, trans-splicing events, recombined B/T-cell receptor sequences and microbial communities. This tutorial is a step-by-step description of the ROP (Read Origin Protocol) pipeline to explore the unmapped reads left from you study.

We assume you have a basic knowledge of sequence analysis and of Unix-based operating systems (although you should be able to run the pipeline on MacOS, some commands may require modification). If you have limited knowledge of UNIX, we encourage you to follow the Unix Tutorial.

[What is ROP?] (https://github.com/smangul1/rop/wiki/What-is-ROP%3F)

[How ROP works?] (https://github.com/smangul1/rop/wiki/How-ROP-works%3F)

[How to install ROP?] (https://github.com/smangul1/rop/wiki/How-to-install-ROP%3F)

[Unix Tutorial] (https://github.com/smangul1/rop/wiki/UNIX-Tutorial)

[Get started] (https://github.com/smangul1/rop/wiki/Get-started)

[ROP analysis: one RNA-Seq sample] (https://github.com/smangul1/rop/wiki/ROP-analysis:--one-RNA-Seq-sampe)

[ROP output details] (https://github.com/smangul1/rop/wiki/ROP-output-details)

[How to map reads and save unmapped reads?] (https://github.com/smangul1/rop/wiki/How-to-map-reads-and-save-unmapped-reads)

Source of every last read

Please do not hesitate to contact us (smangul@ucla.edu) if you have any comments, suggestions, or clarification requests regarding the tutorial or if you would like to contribute to this resource.