Recent changes to Additional options

Additional options modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:31 -0000

--- v3
+++ v4
@@ -1,4 +1,4 @@
-In case you wan to skip STEP1 (Quality Control) please use option `--skipQC`. Please note that in this case low quality , low complexity and rRNA reads will not be filtered out. The input reads must be in the FASTA format (`.fa`  or `.fasta` extension)
+In case you are interested to skip STEP1 (Quality Control) please use option `--skipQC`. Please note that in this case low quality , low complexity and rRNA reads will not be filtered out. The input reads must be in the FASTA format (`.fa`  or `.fasta` extension)

 Please run ROP as follows:

Additional options modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:31 -0000

--- v2
+++ v3
@@ -1,4 +1,8 @@
---skipQC
+In case you wan to skip STEP1 (Quality Control) please use option `--skipQC`. Please note that in this case low quality , low complexity and rRNA reads will not be filtered out. The input reads must be in the FASTA format (`.fa`  or `.fasta` extension)
+
+Please run ROP as follows:
+
+    python rop.py --skipQC example/test.fa example/ropOut60/

-In case you are interested in unmapped reads with reads failed QC filtered, please use --dev option to save the afterQC.fastq 
+In case you are interested in unmapped reads with the reads from QC step to be filtered out, please use `--dev` option to save the `afterQC.fastq`.

Additional options modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:03 -0000

--- v1
+++ v2
@@ -1 +1,4 @@
 --skipQC
+
+
+In case you are interested in unmapped reads with reads failed QC filtered, please use --dev option to save the afterQC.fastq

Additional options modified by Serghei Mangul

Serghei Mangul — Sun, 26 Jun 2016 07:26:00 -0000

--skipQC