This page contains the necessary software to characterize mappability of RNA-Seq reads and create a "blacklist" of genomic positions of mismapped reads. This blacklist can be used to filter potential false positives from variant or RNA editing calls.
This software is described in "BlackOPs: Increasing Confidence in Variant Detection through Mappability Filtering" by CR Cabanski et al. Please cite this article if you use our software or available blacklists in your own analysis.
Features
- Perl scripts to create a custom blacklist
- Download existing blacklists for MapSplice and TopHat
- Detailed tutorial
- Detailed documentation
Follow BlackOPs: RNA-Seq Variant Blacklist Tool
You Might Also Like
Red Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of BlackOPs: RNA-Seq Variant Blacklist Tool!