Russiachand Singh Heikham modified a comment on discussion General Discussion

Hi I have the same problem with Bridger assembler. On test data it works while in real datas it shows the following error. If anyone have solve the problem then please do let me know. Thank you so much! Assemble --reads both.fa -k 25 --pair_end --double_stranded_mode 2>Assemble.log sh: line 1: 159728 Aborted (core dumped) Bridger_r2014-12-01/src/Assemble --reads both.fa -k 25 --pair_end --double_stranded_mode 2> Assemble.log Error, cmd: Bridger_r2014-12-01/src/Assemble --reads both.fa -k 25 --pair_end...

Russiachand Singh Heikham posted a comment on discussion General Discussion

Hi I have the same problem with Bridger assembler. On test data it works while in real datas it shows the following error. If anyone have solve the problem then please do let me know. Thank you so much! Assemble --reads both.fa -k 25 --pair_end --double_stranded_mode 2>Assemble.log sh: line 1: 159728 Aborted (core dumped) /home/heikham/NGS_SW/Bridger_r2014-12-01/src/Assemble --reads both.fa -k 25 --pair_end --double_stranded_mode 2> Assemble.log Error, cmd: /home/heikham/NGS_SW/Bridger_r2014-12-01/src/Assemble...

Nick Schurch posted a comment on discussion General Discussion

I have the same error when trying to assemble reads from an encode dataset - its...

Maryna Lesoway posted a comment on discussion General Discussion

I am experiencing the same issue with Bridger. Any advice or resolution for this...

Andrey Rozenberg posted a comment on discussion General Discussion

Hi, please modify Bridger.pl to allow symlinks: 13c13 < my $ROOTDIR = "$FindBin::Bin";...

Lavinia Gordon posted a comment on discussion General Discussion

Hi, Bridger fails for me at Done converting input files. CMD: cat left.fa right.fa...

RNA-Seq Assembly released /Bridger_r2014-12-01.tar.gz

RNA-Seq Assembly released /Bridger_r2014-12-01.tar.gz

RNA-Seq Assembly released /Bridger_r2014-11-05.tar.gz