Activity for CPAT
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CPAT released /prebuilt_models/zebrafish_Hexamer.tsv
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Rajesh pal posted a comment on discussion General Discussion
I am getting this error on running CPAT cpat.py -g merged.fa -d Human_logitModel.RData -x Human_Hexamer.tsv -o out.log Traceback (most recent call last): File "/u/rajeshpal93/scratch/miniconda2/envs/miRNA/bin/cpat.py", line 241, in <module> main() File "/u/rajeshpal93/scratch/miniconda2/envs/miRNA/bin/cpat.py", line 229, in main print >>sys.stderr, "Input gene file is in FASTA format" TypeError: unsupported operand type(s) for >>: 'builtin_function_or_method' and '_io.TextIOWrapper'. Did you mean...
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Sebastian Schmeier created ticket #1
cpat 2.0.0 print statements generate errors
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Richard posted a comment on discussion General Discussion
Ok I think it was just something weird with my environment. I used a virtual env for the install and it worked.
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Hello, I am trying to run CPAT-1.2.3 but I keep getting this error: Traceback (most recent call last): File "./cpat.py", line 28, in <module> import pysam File "/CPAT-1.2.3/lib/pysam/init.py", line 1, in <module> from csamtools import * ImportError: No module named csamtools I found these files (in this folder CPAT-1.2.3/lib/pysam): csamtools.c csamtools.pxd csamtools.pyx Do you know what the issue is? Is there a missing py file? Thank you, Richard
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Hello, I am trying to run CPAT-1.2.3 but I keep getting this error: Traceback (most recent call last): File "./cpat.py", line 28, in <module> import pysam File "/exports/cmvm/eddie/eb/groups/burt_chicken_isoseq/software/CPAT-1.2.3/lib/pysam/init.py", line 1, in <module> from csamtools import * ImportError: No module named csamtools I found these files (in this folder CPAT-1.2.3/lib/pysam): csamtools.c csamtools.pxd csamtools.pyx Do you know what the issue is? Is there a missing py file? Thank you,...
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Ivan Antonov modified a comment on discussion General Discussion
Hello, I am trying to install the most recent CPAT distribution (1.2.2) on Ubuntu,...
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Hello, I am trying to install the most recent CPAT distribution (1.2.2) on Ubuntu,...
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