Software

Mlvessel

mlvessel is a Matlab implementation of our vessel segmentation method which used the 2D Gabor wavelet and pixel classification, described in our publications. The package can be used in two different manners: through the graphical user interface (GUI) or through script invocation. Use through script invocation relies on input files and produces output as html files, images, and .mat (Matlab format) files. Some of the functionalities are not available through the GUI, being only accessible through script invocation. A Win32 stand-alone executable which corresponds to the GUI is also available below; we recommend using this only if you are unable to run the Matlab scripts directly.

• Download the latest version of mlvessel.
• Trained classifiers and sample images for use with mlvessel 1.2 and later (choose mlvessel-optional.zip or mlvessel-optional-copy.zip).
• Screenshots from mlvessel showing the GUI and some sample html output.
• A video demonstration (24.8 Mb!) of the mlvessel GUI.
• Stand-alone Win32 executable for the mlvessel GUI (169 Mb!).

WaVeS - Wavelet Vessel Segmentation

WaVes is a C++ implementation of the same methods. It is not currently as stable as mlvessel and has less of the functionalities included, though it runs significantly faster. It has been built both on Linux and Win32 platforms and is based on the OpenCV and Gtk libraries.

• Download the latest version of WaVeS. You can choose to download either the source code or a compiled version for Win32.
• Package with the libraries needed to build the win32 version of WaVeS (49.7 Mb; for developers only).