RePlow Activity
Replicate-based caller for the accurate detection of low-frequency SNV
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junhokim
Activity for RePlow
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Karina Lord posted a comment on discussion General Discussion
Hi, I am also curious about this. Was this ever resolved?
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Junho Kim committed [c357c6]
RePlow-1.1.0
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Junho Kim committed [a8098a]
RePlow-1.1.0
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Junho Kim committed [7c508f]
RePlow-1.1.0
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Jesse Gibson posted a comment on discussion General Discussion
Hi, I'm curious if it is possible to use this tool with non-human (invertebrate) data? I have tried running the jar file providing the reference genome (-r), bed file of target regions (-T) and a list of bam files for each of the replicate samples (-b) and I get the following error Rearrange target regions ... Exception in thread "main" java.lang.IllegalArgumentException: Cannot add interval chr1:3745825-3745942 + ., contig not in header at htsjdk.samtools.util.IntervalList.add(IntervalList.java:94)...
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Junho Kim committed [8f0e83]
RePlow-1.1.0
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Junho Kim committed [9977ae]
RePlow-1.1.0
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Junho Kim modified a wiki page
Home
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Junho Kim committed [732ea8]
RePlow-1.1.0
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Junho Kim committed [0a8ff0]
RePlow-1.1.0
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RePlow released /RePlow-1.1.0.tar.gz
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