[Refdb-devel] [ refdb-Bugs-1951835 ] risx url multiplying

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Bugs item #1951835, was opened at 2008-04-25 18:32
Message generated for change (Comment added) made by nobody
You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=385991&aid=1951835&group_id=26091

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Category: refdbd
Group: None
Status: Closed
Resolution: Fixed
Priority: 5
Private: No
Submitted By: Damien Jade Duff (damienjadeduff)
Assigned to: Markus Hoenicka (mhoenicka)
Summary: risx url multiplying

Initial Comment:
Hiya!

Sorry but got another one here for the pile!

Now I'm using sqlite here and the issue seems similar to a previous one in which it wasn't refdb but libdbi. 

If I UPDATE a reference using refdbc that already has a LINK TYPE="url" but I have changed the url (i.e. the update is one in which the url changes), the url tag multiplies - I get another tag, one with the old url, one with the new. I presume I can get any number of them but I haven't checked. The way I judge the intended behaviour of updateref, an update should swap the reference with everything in the RIS tag and drop the old information. Whaddya reckon? Details below.

Cheerios!
Damien

SETUP:

refdb-1.0.0-pre1 (also happening on the svn as of this morning)
libdbi-cvs-20080421
libdbi-drivers-cvs-20080421
sqlite-3.5.8
Linux acws-0175 2.6.9-67.0.7.ELsmp #1 SMP Sat Mar 15 06:54:55 EDT 2008 i686 i686 i386 GNU/Linux

EXAMPLE:

mycomp% cat thisisatest2.risx
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.2.0//EN" "http://refdb.sourceforge.net/dtd/risx-1.2.0/risx.dtd" [
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
<!ENTITY mdash "&#x2014;">
<!ENTITY lsquo "&#x2018;">
<!ENTITY rsquo "&#x2019;">
]>
<ris>

  <entry type="CONF" citekey="THISISATEST">
    <part>
      <title type="full">A New Extension of the Kalman Filter to Nonlinear Systems</title>
      <author role="author">
        <name>Simon J. Julier</name>
      </author>
      <author role="author">
        <name>Jeffrey K. Uhlmann</name>
      </author>
    </part>
    <publication>
      <title type="full">Int. Symp. Aerospace/Defense Sensing, Simul. and Controls</title>
      <pubinfo>
        <pubdate type="primary">
          <date><year>1997</year><month>00</month><day>00</day></date>
        </pubdate>
        <city>Orlando, Florida</city>
        <link type="url">http://www.cs.unc.edu/~welch/kalman/media/pdf/Julier1997_SPIE_KF.pdf</link>
      </pubinfo>
    </publication>
    <libinfo user="djd">
      <notes></notes>
      <reprint status="INFILE"/>
      <availability type="useroot"/>
    </libinfo>
    <contents>
      <keyword>bayesian</keyword>
      <keyword>kalman</keyword>
      <keyword>non-linear</keyword>
      <keyword>nonlinear</keyword>
      <keyword>probability</keyword>
      <keyword>recursive estimation</keyword>
      <keyword>tracking</keyword>
      <keyword>unscented</keyword>
    </contents>
  </entry>
</ris>

mycomp% refdbc -d djdphd -u djd -w abc -C addref -A risx < thisisatest2.risx
999:1 added:0 skipped:0 failed
mycomp% refdbc -d djdphd -u djd -w abc -C getref -t risx :CK:=THISISATEST > testout1.risx
999:1 retrieved:0 failed
mycomp% cat testout1.risx
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.2.0//EN" "http://refdb.sourceforge.net/dtd/risx-1.2.0/risx.dtd" [
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
<!ENTITY mdash "&#x2014;">
<!ENTITY lsquo "&#x2018;">
<!ENTITY rsquo "&#x2019;">
]>
<ris>

  <entry type="CONF" id="209" citekey="THISISATEST">
    <part>
      <title type="full">A New Extension of the Kalman Filter to Nonlinear Systems</title>
      <author role="author">
        <name>Simon J. Julier</name>
      </author>
      <author role="author">
        <name>Jeffrey K. Uhlmann</name>
      </author>
    </part>
    <publication>
      <title type="full">Int. Symp. Aerospace/Defense Sensing, Simul. and Controls</title>
      <pubinfo>
        <pubdate type="primary">
          <date><year>1997</year><month>00</month><day>00</day></date>
        </pubdate>
        <city>Orlando, Florida</city>
        <link type="url">http://www.cs.unc.edu/~welch/kalman/media/pdf/Julier1997_SPIE_KF.pdf</link>
      </pubinfo>
    </publication>
    <libinfo user="djd">
      <reprint status="INFILE"/>
      <availability type="useroot"/>
    </libinfo>
    <contents>
      <keyword>bayesian</keyword>
      <keyword>kalman</keyword>
      <keyword>non-linear</keyword>
      <keyword>nonlinear</keyword>
      <keyword>probability</keyword>
      <keyword>recursive estimation</keyword>
      <keyword>tracking</keyword>
      <keyword>unscented</keyword>
    </contents>
  </entry>
</ris>

mycomp% cat thisisatest.risx
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.2.0//EN" "http://refdb.sourceforge.net/dtd/risx-1.2.0/risx.dtd" [
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
<!ENTITY mdash "&#x2014;">
<!ENTITY lsquo "&#x2018;">
<!ENTITY rsquo "&#x2019;">
]>
<ris>

  <entry type="CONF" id="196" citekey="THISISATEST">
    <part>
      <title type="full">A New Extension of the Kalman Filter to Nonlinear Systems</title>
      <author role="author">
        <name>Simon J. Julier</name>
      </author>
      <author role="author">
        <name>Jeffrey K. Uhlmann</name>
      </author>
    </part>
    <publication>
      <title type="full">Int. Symp. Aerospace/Defense Sensing, Simul. and Controls</title>
      <pubinfo>
        <pubdate type="primary">
          <date><year>1997</year><month>00</month><day>00</day></date>
        </pubdate>
        <city>Orlando, Florida</city>
        <link type="url">http://tinyurl.com/4dqojq</link>
      </pubinfo>
    </publication>
    <libinfo user="djd">
      <notes>bibtex doesn't seem to like all the escape characters refdb puts in the original URL so we switch to tinurl for now...</notes>
      <reprint status="INFILE"/>
      <availability type="useroot"/>
    </libinfo>
    <contents>
      <keyword>bayesian</keyword>
      <keyword>kalman</keyword>
      <keyword>non-linear</keyword>
      <keyword>nonlinear</keyword>
      <keyword>probability</keyword>
      <keyword>recursive estimation</keyword>
      <keyword>tracking</keyword>
      <keyword>unscented</keyword>
    </contents>
  </entry>
</ris>

mycomp% refdbc -d djdphd -u djd -w abc -C updateref -A risx < thisisatest.risx
999:1 updated:0 added:0 skipped:0 failed
mycomp% refdbc -d djdphd -u djd -w abc -C getref -t risx :CK:=THISISATEST > testout2.risx
999:1 retrieved:0 failed
mycomp% cat testout2.risx
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.2.0//EN" "http://refdb.sourceforge.net/dtd/risx-1.2.0/risx.dtd" [
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
<!ENTITY mdash "&#x2014;">
<!ENTITY lsquo "&#x2018;">
<!ENTITY rsquo "&#x2019;">
]>
<ris>

  <entry type="CONF" id="209" citekey="THISISATEST">
    <part>
      <title type="full">A New Extension of the Kalman Filter to Nonlinear Systems</title>
      <author role="author">
        <name>Simon J. Julier</name>
      </author>
      <author role="author">
        <name>Jeffrey K. Uhlmann</name>
      </author>
    </part>
    <publication>
      <title type="full">Int. Symp. Aerospace/Defense Sensing, Simul. and Controls</title>
      <pubinfo>
        <pubdate type="primary">
          <date><year>1997</year><month>00</month><day>00</day></date>
        </pubdate>
        <city>Orlando, Florida</city>
        <link type="url">http://tinyurl.com/4dqojq</link>
        <link type="url">http://www.cs.unc.edu/~welch/kalman/media/pdf/Julier1997_SPIE_KF.pdf</link>
      </pubinfo>
    </publication>
    <libinfo user="djd">
      <notes>bibtex doesn't seem to like all the escape characters refdb puts in the original URL so we switch to tinurl for now...</notes>
      <reprint status="INFILE"/>
      <availability type="useroot"/>
    </libinfo>
    <contents>
      <keyword>bayesian</keyword>
      <keyword>kalman</keyword>
      <keyword>non-linear</keyword>
      <keyword>nonlinear</keyword>
      <keyword>probability</keyword>
      <keyword>recursive estimation</keyword>
      <keyword>tracking</keyword>
      <keyword>unscented</keyword>
    </contents>
  </entry>
</ris>

----------------------------------------------------------------------

Comment By: Nobody/Anonymous (nobody)
Date: 2011-03-09 06:31

Message:
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[url=http://istruweloufy.com/]istruweloufy[/url],
[link=http://jgcaxqmvkzdg.com/]jgcaxqmvkzdg[/link],
http://yizhxnypuhmv.com/

----------------------------------------------------------------------

Comment By: Markus Hoenicka (mhoenicka)
Date: 2008-04-29 22:11

Message:
Logged In: YES 
user_id=85809
Originator: NO

Hi again,

I've checked in a fix which resolves the URL duplication (and hopefully
doesn't break anything else), as well as an updated installation chapter
which avoids naming the dump file versions explicitly. I'm going to close
this bug, but feel free to reopen it if updating references should still
fail on your box.

regards,
Markus

----------------------------------------------------------------------

Comment By: Markus Hoenicka (mhoenicka)
Date: 2008-04-29 19:55

Message:
Logged In: YES 
user_id=85809
Originator: NO

Hi,

lets go through your tests one by one:

Part 1: URL duplication
I'm afraid I made an error when checking the URL duplication stuff.
Apparently I updated an existing entry with the original dataset - this
reproducibly does not duplicate the URL. However, if I follow your
instructions step by step, I do see the duplicate. I'll provide a fix
asap.

Part 2: refdb main database file creation
If the manual still mentions refdb.2.dump.sqlite, the information is
outdated. I'll try and rewrite the sections so I don't have to update them
with each new version of the dump files. Indeed, refdb.3.dump.sqlite is the
current version which should work ok.

Part 3: refdbd -a
As for upgrading from a main database version 2 to version 3, there was
indeed a bug caused by an incomplete migration to the latest libdbi
version. I've fixed that in svn, and I can successfully update a sqlite3
main database.

Other stuff:
I had forgotten to check in refdbrtfrc.  It should pop up next time you
upgrade your svn version.

regards,
Markus

----------------------------------------------------------------------

Comment By: Damien Jade Duff (damienjadeduff)
Date: 2008-04-29 16:51

Message:
Logged In: YES 
user_id=2066694
Originator: YES

Oh, hi
Incidentally, I should mention that the same stuff also happens if I don't
ever add the ~/simplerisx.risx file, which only is an older version of risx
because I used an older xml skeleton and haven't updated. I just was using
it to check that the system was working.
Peace
Damien

----------------------------------------------------------------------

Comment By: Damien Jade Duff (damienjadeduff)
Date: 2008-04-29 16:43

Message:
Logged In: YES 
user_id=2066694
Originator: YES

Hi there!

Thanks very much for your reply! I appreciate you taking a look!

I was, it is true, using 0.9.9-1 when I first started using refdb again
recently, but I'm now using the svn. But the thing is I put the refs into
the DB by adding an old dumped RISX file into an empty DB (I give an
example below).

I was thinking that it may be my route to installation that is specific?
Since 'refdbd -a' segfaults (not sure why, but details below - part *3) and
refdb complains that a DB created with refdb.2.dump.sqlite is an out of
date DB (again below, part *2 - though I think the manual still refers to
refdb.2.dump.sqlite), I was creating a basic refdb DB using the provided
sql file refdb.3.dump.sqlite (full details below, part *1, including a
replication of bug 1951835 after creating a new DB from scratch) - which
*seemed* to produce the desired results, except for the bugs I mentioned
which made themselves apparent later, so I had (perhaps foolishingly)
assumed it was the way to go.

The other two things that are unique about my install is that I'm using my
own database file directory for the embedded DB, and the whole install was
done onto a user owned file system (i.e. nothing from root). I'm not sure
if that would make any difference. ALSO, in the source directory I needed
to go to /etc and type "touch refdbrtfrc" as the make script seemed to need
it but it wasn't there, and I renamed the man and doc directories (and put
in dummy Makefiles) so that it would compile without the docs (again, I
don't think any of that should make a difference?).

Anyway, I'll just put the logs of my journey, from DB creation to
insertion, below, and hope the tale will amuse...

Cheerios!
Damien

**** FIRST PART *1 - REFDB.3.DUMP.SQLITE + DUPLICATED URLS ****

mycomp% ls

mycomp% sqlite3 refdb < ~/HD/binary/share/refdb/sql/refdb.3.dump.sqlite

mycomp% ls
refdb

** (start refdbd in another window) **

mycomp% refdbd -s -l 7 -e 0
dbi_driver_dir went to:

dbi is up using default driver dir
Available libdbi database drivers:
pgsql
sqlite3
Requested libdbi driver found:
sqlite3
Database directory:
/data/private/djd/Library/ReferenceDatabaseSqlite3/
application server started
share extended notes by default
use /tmp/refdbd_fifo8917 as fifo
server waiting n_max_fd=4

** (back to original window) **

mycomp% refdba
refdba: createdb djdphd
999:1 created:0 failed
refdba: quit

mycomp% ls
DB_VERSION  djdphd  refdb

mycomp% refdbc -u 132 -w 123 -C addref -A risx < ~/simplerisx.risx
999:1 added:0 skipped:0 failed
mycomp% refdbc -u 132 -w 123 -C addref -A risx < ~/thisisatest2.risx
999:1 added:0 skipped:0 failed
mycomp% refdbc -u 132 -w 123 -C updateref -A risx < ~/thisisatest.risx
999:1 updated:0 added:0 skipped:0 failed
mycomp% refdbc -u 132 -w 123 -C getref -t risx :ID:\>0 >
~/aftertesting.risx
999:2 retrieved:0 failed
mycomp% cat ~/aftertesting.risx
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.2.0//EN"
"http://refdb.sourceforge.net/dtd/risx-1.2.0/risx.dtd" [
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
<!ENTITY mdash "&#x2014;">
<!ENTITY lsquo "&#x2018;">
<!ENTITY rsquo "&#x2019;">
]>
<ris>

  <entry type="GEN" id="1" citekey="TESTY">
    <part>
      <title type="full"/>
    </part>
    <publication>
      <title type="full">test1</title>
      <author>
        <name>testa testb</name>
      </author>
      <pubinfo>
        <pubdate type="primary">
          <date><year>2008</year><month>00</month><day>00</day></date>
        </pubdate>
      </pubinfo>
    </publication>
  </entry>

  <entry type="CONF" id="2" citekey="THISISATEST">
    <part>
      <title type="full">A New Extension of the Kalman Filter to Nonlinear
Systems</title>
      <author role="author">
        <name>Simon J. Julier</name>
      </author>
      <author role="author">
        <name>Jeffrey K. Uhlmann</name>
      </author>
    </part>
    <publication>
      <title type="full">Int. Symp. Aerospace/Defense Sensing, Simul. and
Controls</title>
      <pubinfo>
        <pubdate type="primary">
          <date><year>1997</year><month>00</month><day>00</day></date>
        </pubdate>
        <city>Orlando, Florida</city>
        <link type="url">http://tinyurl.com/4dqojq</link>
        <link
type="url">http://www.cs.unc.edu/~welch/kalman/media/pdf/Julier1997_SPIE_KF.pdf</link>
      </pubinfo>
    </publication>
    <libinfo user="djd">
      <notes>bibtex doesn't seem to like all the escape characters refdb
puts in the original URL so we switch to tinurl for now...</notes>
      <reprint status="INFILE"/>
      <availability type="useroot"/>
    </libinfo>
    <contents>
      <keyword>bayesian</keyword>
      <keyword>kalman</keyword>
      <keyword>non-linear</keyword>
      <keyword>nonlinear</keyword>
      <keyword>probability</keyword>
      <keyword>recursive estimation</keyword>
      <keyword>tracking</keyword>
      <keyword>unscented</keyword>
    </contents>
  </entry>
</ris>

mycomp% cat ~/thisisatest2.risx

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.2.0//EN"
"http://refdb.sourceforge.net/dtd/risx-1.2.0/risx.dtd" [
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
<!ENTITY mdash "&#x2014;">
<!ENTITY lsquo "&#x2018;">
<!ENTITY rsquo "&#x2019;">
]>
<ris>

  <entry type="CONF" citekey="THISISATEST">
    <part>
      <title type="full">A New Extension of the Kalman Filter to Nonlinear
Systems</title>
      <author role="author">
        <name>Simon J. Julier</name>
      </author>
      <author role="author">
        <name>Jeffrey K. Uhlmann</name>
      </author>
    </part>
    <publication>
      <title type="full">Int. Symp. Aerospace/Defense Sensing, Simul. and
Controls</title>
      <pubinfo>
        <pubdate type="primary">
          <date><year>1997</year><month>00</month><day>00</day></date>
        </pubdate>
        <city>Orlando, Florida</city>
        <link
type="url">http://www.cs.unc.edu/~welch/kalman/media/pdf/Julier1997_SPIE_KF.pdf</link>
      </pubinfo>
    </publication>
    <libinfo user="djd">
      <notes></notes>
      <reprint status="INFILE"/>
      <availability type="useroot"/>
    </libinfo>
    <contents>
      <keyword>bayesian</keyword>
      <keyword>kalman</keyword>
      <keyword>non-linear</keyword>
      <keyword>nonlinear</keyword>
      <keyword>probability</keyword>
      <keyword>recursive estimation</keyword>
      <keyword>tracking</keyword>
      <keyword>unscented</keyword>
    </contents>
  </entry>
</ris>

mycomp% cat ~/thisisatest.risx

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.2.0//EN"
"http://refdb.sourceforge.net/dtd/risx-1.2.0/risx.dtd" [
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
<!ENTITY mdash "&#x2014;">
<!ENTITY lsquo "&#x2018;">
<!ENTITY rsquo "&#x2019;">
]>
<ris>

  <entry type="CONF" id="196" citekey="THISISATEST">
    <part>
      <title type="full">A New Extension of the Kalman Filter to Nonlinear
Systems</title>
      <author role="author">
        <name>Simon J. Julier</name>
      </author>
      <author role="author">
        <name>Jeffrey K. Uhlmann</name>
      </author>
    </part>
    <publication>
      <title type="full">Int. Symp. Aerospace/Defense Sensing, Simul. and
Controls</title>
      <pubinfo>
        <pubdate type="primary">
          <date><year>1997</year><month>00</month><day>00</day></date>
        </pubdate>
        <city>Orlando, Florida</city>
        <link type="url">http://tinyurl.com/4dqojq</link>
      </pubinfo>
    </publication>
    <libinfo user="djd">
      <notes>bibtex doesn't seem to like all the escape characters refdb
puts in the original URL so we switch to tinurl for now...</notes>
      <reprint status="INFILE"/>
      <availability type="useroot"/>
    </libinfo>
    <contents>
      <keyword>bayesian</keyword>
      <keyword>kalman</keyword>
      <keyword>non-linear</keyword>
      <keyword>nonlinear</keyword>
      <keyword>probability</keyword>
      <keyword>recursive estimation</keyword>
      <keyword>tracking</keyword>
      <keyword>unscented</keyword>
    </contents>
  </entry>
</ris>

mycomp% cat ~/simplerisx.risx

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE ris PUBLIC "-//Markus Hoenicka//DTD Ris V1.0.2//EN"
"/data/private/djd/binary/share/refdb/dtd/risx.dtd"
[
<!ENTITY lt "&#38;#60;">
<!ENTITY gt "&#62;">
<!ENTITY amp "&#38;#38;">
]>
<ris>
        <entry type="GEN" citekey="TESTY">
                <publication>
                        <title type="full">test1</title>
                        <author>
                                <name>testa testb</name>
                        </author>
                        <pubinfo>
                                <pubdate>
                                        <date>
                                                <year>2008</year>
                                                <month></month>
                                                <day></day>
                                        </date>
                                </pubdate>

                        </pubinfo>
                </publication>

        </entry>
</ris>

mycomp%

**** SECOND PART *2 - REFDB.2.DUMP.SQLITE ****

(go to other window and close refdbd)
(then come back)

mycomp% pwd
/data/private/djd/Library/ReferenceDatabaseSqlite3
mycomp% rm *
mycomp% sqlite3 refdb < ~/HD/binary/share/refdb/sql/refdb.2.dump.sqlite

** (go back now and restart refdbd) **

mycomp% refdbd -s -l 7 -e 0
dbi_driver_dir went to:

dbi is up using default driver dir
Available libdbi database drivers:
pgsql
sqlite3
Requested libdbi driver found:
sqlite3
Database directory:
/data/private/djd/Library/ReferenceDatabaseSqlite3/
application server started
share extended notes by default
use /tmp/refdbd_fifo9031 as fifo
server waiting n_max_fd=4

** (and now back to original window) **

mycomp% refdba
refdba: createdb djdphd
main database version is not supported
refdba: quit

**** THIRD PART *3 - REFDBD -A ****

** (go to other window and close refdbd)** 
** (then come back) **

mycomp% pwd
/data/private/djd/Library/ReferenceDatabaseSqlite3

mycomp% rm *

mycomp% refdbd -a -e 0 -l 7
dbi_driver_dir went to:

dbi is up using default driver dir
Available libdbi database drivers:
pgsql
sqlite3
Requested libdbi driver found:
sqlite3
Database directory:
/data/private/djd/Library/ReferenceDatabaseSqlite3/
check main database version
localhost
djd

sqlite3
/data/private/djd/Library/ReferenceDatabaseSqlite3/
UTF-8
Segmentation fault
mycomp%

**** SYSTEM INFO ****

mycomp% refdbd -v
refdbd 1.0.0-pre1 built from svn revision 613 ma...@mh...
You may redistribute and modify this software under the terms of the GNU
General Public License.
mycomp% refdbc -v
refdbc 1.0.0-pre1 built from svn revision 613 ma...@mh...
You may redistribute and modify this software under the terms of the GNU
General Public License.
mycomp% refdba -v
refdba 1.0.0-pre1 built from svn revision 613 ma...@mh...
You may redistribute and modify this software under the terms of the GNU
General Public License.
mycomp% uname -a
Linux mycomp 2.6.9-67.0.7.ELsmp #1 SMP Sat Mar 15 06:54:55 EDT 2008 i686
i686 i386 GNU/Linux
mycomp%

LIBDBI:
libdbi-cvs-20080421
libdbi-drivers-cvs-20080421

mycomp% cat ~/HD/binary/etc/refdb/refdbdrc | sed s/^#.\*\$// | grep '.'
refdblib /data/private/djd/binary/share/refdb
main_db refdb
serverip        localhost
dbsport
dbserver        sqlite3
dbpath          /data/private/djd/Library/ReferenceDatabaseSqlite3/
port    9734
logfile /data/private/djd/binary/var/log/refdbd.log
logdest file
loglevel info
pidfile         /data/private/djd/binary/var/run/refdbd.pid
remoteadmin f
remoteconnect f
keep_pnames t
keyword_scan f
db_encoding     UTF-8
in_encoding     UTF-8

mycomp% cat ~/.refdbarc | sed s/^#.\*\$// | grep '.'
serverip        127.0.0.1
port    9734
pager   less
username  root
passwd
logdest file
loglevel info
logfile /data/private/djd/binary/var/log/refdba.log

mycomp% cat ~/.refdbcrc | sed s/^#.\*\$// | grep '.'
serverip        127.0.0.1
port    9734
pager   less
passwd *
defaultdb       djdphd
pdfroot /data/private/djd/Library
logdest file
loglevel info
logfile /data/private/djd/binary/var/log/refdbc.log
cssurl /data/private/djd/binary/share/refdb/css/refdb.css
fromencoding UTF-8
toencoding UTF-8

----------------------------------------------------------------------

Comment By: Markus Hoenicka (mhoenicka)
Date: 2008-04-27 20:48

Message:
Logged In: YES 
user_id=85809
Originator: NO

I guess this is sort of a duplicate of #1951049. If you missed the upgrade
notice from 0.9.8 or earlier to 0.9.9 or later, I reckon you'd see this
kind of problem. Please see the comments to bug #1951049 for further
instructions.

regards,
Markus

----------------------------------------------------------------------

You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=385991&aid=1951835&group_id=26091