Ernesto Picardi - 2017-11-03

Hi,
my impression is that pysam version is not corrected.
You should use version 0.6 or 0.7.
Best,
Ernesto

Il giorno 01 nov 2017, alle ore 13:25, wangzhennan wangzhennan@users.sf.net ha scritto:

[tickets:#9] https://sourceforge.net/p/reditools/tickets/9/ list index out of range

Status: New
Created: Wed Nov 01, 2017 12:25 PM UTC by wangzhennan
Last Updated: Wed Nov 01, 2017 12:25 PM UTC
Owner: nobody

HI,
When I used REDItools to deal with my data, there is an error:
Script time --> START: 01/11/2017 20:16:51
Analysis ID: 877622016
Traceback (most recent call last):
File "/Storage/data002/wangzn/software/REDItools-1.0.4/bin/REDItoolDenovo.py", line 746, in <module>
if int(l[2])+int(l[3]) > 0: rrefs[l[0]]=int(l[1])
IndexError: list index out of range
The command was:
REDItoolDenovo.py -i rice.sorted.bam -f CM_genome.fa -o aaaa -t 11</module>

I just want to test the software, but I can not continue. Please help me to solve it.

                                                                                                                      Wang

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