#7 a question about the output file of REDItoolDenovo

[rivaldotry]

Hi Dr Picardi,
I am using the ReditoolDenovo to discover RNA editing events. However, except for the normal output outTable, it also outputs a file called OutSub. I am curious about what it is. Is it contained the empirical distribution of each kind of Substitution that detected in the RNA-seq data?(eg, the number of AT substituitions that observed in the RNA reads?)
Best,
rivaldotry

[Ernesto Picardi]

Hi rivaldotry,
sorry for the delay. You are correct. The OutSub file prints out the empirical distribution of each kind of substitution detected in the RNAseq data and according to your input parameters (for example the quality score).
It is a python dictionary printed as a string.

Best,
Ernesto