Ernesto Picardi - 2016-04-29

Dear Stéphanie,
sorry for the inconvenient.
The documentation is now available at http://srv00.recas.ba.infn.it/reditools/ http://srv00.recas.ba.infn.it/reditools/
Here you will find the correct link to the testing dataset as well as TAB format required for REDItoolKnown.py.

Hope this helps.

Best,

Ernesto

Il giorno 28 apr 2016, alle ore 10:42, Stéphanie stoumoi@users.sf.net ha scritto:

[tickets:#6] https://sourceforge.net/p/reditools/tickets/6/ List example of known RNA editing events for REDItoolKnown.py

Status: New
Created: Thu Apr 28, 2016 08:42 AM UTC by Stéphanie
Last Updated: Thu Apr 28, 2016 08:42 AM UTC
Owner: nobody

The URL to download a testing dataset doesn't work (srv00.ibbe.cnr.it/reditools/data/testREDItools.tar.gz).
I would use the REDItoolKnown.py script but I have a problem with the list of known RNA editing events (option -l).
I try with this format :

chr1 14603 14604 rs541940975 1 +
chr1 15117 15118 rs11580262 1 +

but I have this error :

Script time --> START: 28/04/2016 10:11:03
Analysis ID: 984549297
Indexing file with known positions.
[E::get_intv] failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "chr1 14603 14604 rs541940975 1 +"
Erreur de segmentation

Is it possible to have a example or understand this error ?

Best,
Stéphanie

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