[rDock-list-def] issues in installing rDock

[Andriy K. <an...@ua...>]

Hello,

I downloaded and started installing rDock on my Ubuntu desktop.
Unfortunately, it interrupted with an error message - please see (1) below,
highlighted in bold.

Due to message (1), I then started installing *lpopt*.
However, it ended up again with an error message - please see (2) below,
highlighted in bold.

Would you please help me out to resolve this issue.

Sincerely,


Dr. Andriy Kovalenko

Research Assistant
Department of Biological Sciences
University of Alberta
CW 405, Biological Sciences Bldg.
Edmonton, Alberta, Canada T6G 2E9

Tel:  780-940-7477 (cell)
e-mail:  and...@ua...


(1) andriy@andriy-Precision-Tower-5810:~/rDock-main$ *sudo make install*
make lib
make[1]: Entering directory '/home/andriy/rDock-main'
g++ -Werror -pipe -std=c++14 -fPIC -O3 -ffast-math   -D_NDEBUG -shared
-L./lib obj/RbtTriposAtomType.o obj/RbtMdlFileSink.o
obj/RbtBaseMolecularFileSink.o obj/RbtPdbFileSource.o obj/RbtBaseIntraSF.o
obj/RbtFilter.o obj/RbtSubject.o obj/RbtEuler.o obj/RbtPMFDirSource.o
obj/RbtPrincipalAxes.o obj/RbtCellTokenIter.o obj/RbtDihedralTargetSF.o
obj/RbtGATransform.o obj/RbtChromDihedralRefData.o
obj/RbtBaseMolecularFileSource.o obj/RbtRotSF.o obj/RbtFlexAtomFactory.o
obj/RbtNullTransform.o obj/RbtChrom.o obj/RbtSFAgg.o obj/RbtBond.o
obj/RbtBiMolWorkSpace.o obj/RbtAtomFuncs.o obj/RbtNonBondedGrid.o
obj/RbtChromPositionRefData.o obj/RbtAlignTransform.o
obj/RbtSiteMapperFactory.o obj/RbtObserver.o obj/RbtModelMutator.o
obj/RbtPsfFileSource.o obj/RbtAromIdxSF.o obj/RbtPolarSF.o
obj/RbtBaseTransform.o obj/RbtBaseBiMolTransform.o obj/RbtSetupPolarSF.o
obj/RbtDirectorySource.o obj/RbtPopulation.o obj/RbtCavityFillSF.o
obj/RbtBaseUniMolTransform.o obj/RbtFilterExpressionVisitor.o
obj/RbtCharmmTypesFileSource.o obj/RbtConstraint.o obj/RbtMOEGrid.o
obj/RbtChromFactory.o obj/RbtMOL2FileSource.o obj/RbtNonBondedHHSGrid.o
obj/RbtChromOccupancyElement.o obj/RbtChromElement.o
obj/RbtChromPositionElement.o obj/RbtAtom.o obj/RbtTransformAgg.o
obj/RbtCavityGridSF.o obj/RbtRandLigTransform.o obj/RbtModel.o
obj/RbtCrdFileSource.o obj/RbtAnnotation.o obj/RbtDihedralSF.o
obj/RbtSimplexTransform.o obj/RbtParser.o obj/RbtDebug.o obj/RbtPMFIdxSF.o
obj/RbtElementFileSource.o obj/RbtLigandSiteMapper.o obj/RbtVdwIntraSF.o
obj/RbtLigandFlexData.o obj/RbtAnnotationHandler.o obj/RbtPseudoAtom.o
obj/RbtBaseObject.o obj/RbtRandPopTransform.o obj/RbtSetupPMFSF.o
obj/RbtSolventFlexData.o obj/RbtRealGrid.o obj/RbtReceptorFlexData.o
obj/RbtSFFactory.o obj/RbtChromDihedralElement.o obj/RbtSetupSASF.o
obj/RbtNoeRestraint.o obj/RbtPsfFileSink.o obj/RbtSiteMapper.o
obj/RbtPolarIntraSF.o obj/RbtSATypes.o obj/RbtBaseGrid.o obj/RbtWorkSpace.o
obj/RbtToken.o obj/RbtSphereSiteMapper.o obj/RbtBaseIdxSF.o
obj/RbtVdwGridSF.o obj/RbtSimAnnTransform.o obj/RbtContext.o
obj/RbtPRMFactory.o obj/RbtChromOccupancyRefData.o obj/RbtVdwIdxSF.o
obj/RbtBaseFileSink.o obj/RbtInteractionGrid.o obj/RbtDihedralIntraSF.o
obj/RbtPharmaSF.o obj/RbtPMFGridSF.o obj/RbtDockingSite.o
obj/RbtNmrRestraintFileSource.o obj/RbtRand.o obj/RbtVdwSF.o
obj/RbtCharmmDataSource.o obj/RbtTransformFactory.o obj/RbtBaseFileSource.o
obj/Rbt.o obj/RbtPMF.o obj/RbtMdlFileSource.o obj/RbtParamHandler.o
obj/RbtParameterFileSource.o obj/RbtFFTGrid.o obj/RbtNmrSF.o
obj/RbtPolarIdxSF.o obj/RbtCrdFileSink.o obj/RbtBaseSF.o
obj/RbtBaseInterSF.o obj/RbtTetherSF.o obj/RbtStringTokenIter.o
obj/RbtFilterExpression.o obj/RbtGenome.o obj/RbtConstSF.o obj/RbtSAIdxSF.o
obj/simplex/NMSearch.o obj/GP/RbtGPChromosome.o obj/GP/RbtGPGenome.o
obj/GP/RbtGPParser.o obj/GP/RbtGPFFGold.o obj/GP/RbtGPFFSpike.o
obj/GP/RbtGPFitnessFunction.o obj/GP/RbtGPPopulation.o
obj/GP/RbtGPFFCrossDock.o obj/GP/RbtGPFFCHK1.o obj/GP/RbtGPFFHSP90.o -o
lib/libRbt.so -lpopt -lm -lstdc++





*/usr/bin/ld: cannot find -lpopt: No such file or directorycollect2: error:
ld returned 1 exit statusmake[1]: *** [Makefile:190: lib/libRbt.so] Error
1make[1]: Leaving directory '/home/andriy/rDock-main'make: ***
[Makefile:133: build_lib] Error 2*

(2) andriy@andriy-Precision-Tower-5810:~/Ipopt$ ./configure CXX=g++-11.4.0
CC=gcc-11.4.0 F77=gfortran-11.4.0
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make supports the include directive... yes (GNU style)
checking whether the C compiler works... no


*configure: error: in `/home/andriy/Ipopt':configure: error: C compiler
cannot create executables*See `config.log' for more details