[Rdkit-discuss] RMSD between molecules

[Eduardo M. <edu...@gm...>]

Hi I'm trying to calculate the RMSD between conformers of the same
molecules stores in separate mol file.
I figured out a way:

m1= Chem.FromMolFile('1.mol')
m2= Chem.FromMolFile('2.mol')

m1.AddConformer(M2.GetConformer(-1),1)
AllChem.GetConformerRMS(m1,0,1)

Is there another way??