Re: [Rdkit-discuss] Unknown CMake command "downloadAndCheckMD5"

[Paolo T. <pao...@gm...>]

Hi Tim,

could you please run a pwd in your build directory? Also, could you try 
deleting CMakeCache.txt and re-running cmake?

With "subdirectory" I was asking whether your build directory was a 
subdirectory of the RDKit root dir or a subdirectory of gmwrapper, 
because I get that error if I try to run your command from 
rdkit/Code/JavaWrappers/gmwrapper/build rather than from rdkit/build, as 
in that case the main CMakeLists.txt file is not sourced.

Cheers,
p.

On 28/05/2020 17:01, Tim Dudgeon wrote:
> well, I am running it from a subdirectory - the build subdirectory 
> which is where it has always been run from.
> e.g.
>
> mkdir build
> cd build
> cmake -DPYTHON_EXECUTABLE=/usr/bin/python3 
>  -DRDK_BUILD_INCHI_SUPPORT=ON  -DRDK_BUILD_AVALON_SUPPORT=ON 
>  -DRDK_BUILD_PYTHON_WRAPPERS=ON  -DRDK_BUILD_SWIG_WRAPPERS=ON ..
>
>
>
> Tim
>
> On Thu, May 28, 2020 at 4:46 PM Paolo Tosco 
> <pao...@gm... <mailto:pao...@gm...>> wrote:
>
>     Hi Tim,
>
>     downloadAndCheckMD5 is a function defined in
>     Code/cmake/Modules/RDKitUtils.cmake, which is included by the main
>     CMakeLists.txt file and then is available to all children
>     CMakeLists.txt files.
>
>     From the line number where the error occurs
>
>     $ grep -n downloadAndCheckMD5 `find . -name CMakeLists.txt`
>     ./Code/JavaWrappers/gmwrapper/CMakeLists.txt:21:
>     downloadAndCheckMD5(${JUNIT_URL} "${RDKit_JavaLibDir}/junit.jar"
>     ${JUNIT_MD5SUM})
>
>     it looks like you might be running cmake in a subdirectory rather
>     than in the RDKit root directory.
>
>     HTH, cheers
>     p.
>
>     On 28/05/2020 16:28, Tim Dudgeon wrote:
>>     I'm not able to build form source (master branch) from a new
>>     machine I've recently set up (Ubuntu 20.04).
>>
>>     $ cmake  -DPYTHON_EXECUTABLE=/usr/bin/python3
>>      -DRDK_BUILD_INCHI_SUPPORT=ON  -DRDK_BUILD_AVALON_SUPPORT=ON
>>      -DRDK_BUILD_PYTHON_WRAPPERS=ON  -DRDK_BUILD_SWIG_WRAPPERS=ON  ..
>>     CMake Error at CMakeLists.txt:21 (downloadAndCheckMD5):
>>       Unknown CMake command "downloadAndCheckMD5".
>>
>>
>>     -- Configuring incomplete, errors occurred!
>>     See also
>>     "/home/timbo/github/rdkit/rdkit_2020_03/CMakeFiles/CMakeOutput.log".
>>
>>     $ cmake --version
>>     cmake version 3.16.3
>>     Has anything changed with cmake recently?
>>
>>     Tim
>>
>>
>>     _______________________________________________
>>     Rdkit-discuss mailing list
>>     Rdk...@li...  <mailto:Rdk...@li...>
>>     https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
>