Re: [Rdkit-devel] RDKit 2018.03.1 Build and Installation

[Greg L. <gre...@gm...>]

cmake is finding boost v1.67, not the system boost.


On Wed, May 16, 2018 at 2:34 PM alb greg <agp...@gm...> wrote:

> Ubuntu 16.04
>
> *CmakeMessages :*
>
> -- The C compiler identification is GNU 5.4.0
> -- The CXX compiler identification is GNU 5.4.0
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Check if the system is big endian
> -- Searching 16 bit integer
> -- Looking for sys/types.h
> -- Looking for sys/types.h - found
> -- Looking for stdint.h
> -- Looking for stdint.h - found
> -- Looking for stddef.h
> -- Looking for stddef.h - found
> -- Check size of unsigned short
> -- Check size of unsigned short - done
> -- Using unsigned short
> -- Check if the system is big endian - little endian
> -- Found PythonInterp: /usr/bin/python3 (found version "3.5.2")
> -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so (found
> version "3.5.2")
> -- Found Eigen3: /usr/include/eigen3 (Required is at least version
> "2.91.0")
> -- Looking for pthread.h
> -- Looking for pthread.h - found
> -- Looking for pthread_create
> -- Looking for pthread_create - not found
> -- Looking for pthread_create in pthreads
> -- Looking for pthread_create in pthreads - not found
> -- Looking for pthread_create in pthread
> -- Looking for pthread_create in pthread - found
> -- Found Threads: TRUE
> -- Boost version: 1.67.0
> -- Found the following Boost libraries:
> --   serialization
> == Done updating pains files
> -- Configuring done
> -- Generating done
> -- Build files have been written to: /home/user/src/rdkit/rdkit/build
>
> *CmakeErrors :*
>
> CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725
> (message):
>   Imported targets not available for Boost version 106700
> Call Stack (most recent call first):
>   /usr/share/cmake-3.5/Modules/FindBoost.cmake:763
> (_Boost_COMPONENT_DEPENDENCIES)
>   /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
> (_Boost_MISSING_DEPENDENCIES)
>   CMakeLists.txt:194 (find_package)
>
>
> CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725
> (message):
>   Imported targets not available for Boost version 106700
> Call Stack (most recent call first):
>   /usr/share/cmake-3.5/Modules/FindBoost.cmake:763
> (_Boost_COMPONENT_DEPENDENCIES)
>   /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
> (_Boost_MISSING_DEPENDENCIES)
>   CMakeLists.txt:194 (find_package)
>
>
> PYTHON Py_ENABLE_SHARED: 1
> PYTHON USING LINK LINE: -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions
> -Wl,-Bsymbolic-functions -Wl,-z,relro
> CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725
> (message):
>   Imported targets not available for Boost version 106700
> Call Stack (most recent call first):
>   /usr/share/cmake-3.5/Modules/FindBoost.cmake:763
> (_Boost_COMPONENT_DEPENDENCIES)
>   /usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
> (_Boost_MISSING_DEPENDENCIES)
>   CMakeLists.txt:303 (find_package)
>
>
> == Using strict rotor definition
> -- Found MAEParser source in
> /home/labbe/src/rdkit/rdkit/External/CoordGen/maeparser
> -- Found coordgenlibs source in
> /home/labbe/src/rdkit/rdkit/External/CoordGen/coordgenlibs
> == Updating Filters.cpp from pains file
> -- Found RapidJSON source in /home/labbe/src/rdkit/rdkit/External
>
>
>
>
>
> 2018-05-16 13:05 GMT+02:00 Greg Landrum <gre...@gm...>:
>
>> On Wed, May 16, 2018 at 12:53 PM alb greg <agp...@gm...>
>> wrote:
>>
>>> I followed the instructions in this dockerfile but it failed with an
>>> error 2 during "make -j3 .. install" command.
>>>
>>>
>> In order to be able to help I need a bit more information than that. What
>> was the error you encountered? What version of Ubuntu? etc.
>>
>> -greg
>>
>
>