Re: [Rdkit-devel] problem building rdkit

[TJ O'D. <tj...@ac...>]

Thanks for your attention to this.
Have a good ACS meeting and enjoy New Orleans!

On Mon, Mar 19, 2018 at 7:04 AM, Greg Landrum <gre...@gm...>
wrote:

> hmm, I'm stumped.
> I'm going to have to try to reproduce the problem on a linux box.
> Since I'm traveling this week (at the ACS in New Orleans), this may take a
> while.
>
> -greg
>
>
> On Mon, Mar 19, 2018 at 8:41 AM, TJ O'Donnell <tj...@ac...> wrote:
>
>> I grep'd with a slight mod to your suggestion and got these few lines.
>> There are many others with all lower case boost_thread and boost_serial
>>
>> tj@vmmint:~/RDKit/rdkit/build$ grep Boost_SERIAL CMakeCache.txt
>> Boost_SERIALIZATION_LIBRARY_DEBUG:FILEPATH=/usr/lib/x86_64-
>> linux-gnu/libboost_serialization.so
>> Boost_SERIALIZATION_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64
>> -linux-gnu/libboost_serialization.so
>> //ADVANCED property for variable: Boost_SERIALIZATION_LIBRARY_DEBUG
>> Boost_SERIALIZATION_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
>> //ADVANCED property for variable: Boost_SERIALIZATION_LIBRARY_RELEASE
>> Boost_SERIALIZATION_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
>>
>> tj@vmmint:~/RDKit/rdkit/build$ grep Boost_THREAD CMakeCache.txt
>> Boost_THREAD_LIBRARY_DEBUG:FILEPATH=/usr/lib/x86_64-linux-
>> gnu/libboost_thread.so
>> Boost_THREAD_LIBRARY_RELEASE:FILEPATH=/usr/lib/x86_64-linux-
>> gnu/libboost_thread.so
>> //ADVANCED property for variable: Boost_THREAD_LIBRARY_DEBUG
>> Boost_THREAD_LIBRARY_DEBUG-ADVANCED:INTERNAL=1
>> //ADVANCED property for variable: Boost_THREAD_LIBRARY_RELEASE
>> Boost_THREAD_LIBRARY_RELEASE-ADVANCED:INTERNAL=1
>>
>> The case-insensitive search has lines like this and many more:
>>
>> tj@vmmint:~/RDKit/rdkit/build$ grep -i boost_SERIAL CMakeCache.txt
>> rdqueries_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeom
>> etryLib;general;DataStructs;general;RDGeneral;general;
>> RDBoost;general;/usr/lib/x86_64-linux-gnu/libpython2.7.so;
>> general;/usr/lib/x86_64-linux-gnu/libboost_python.so;
>> general;/usr/lib/x86_64-linux-gnu/libboost_thread.so;general
>> ;/usr/lib/x86_64-linux-gnu/libboost_system.so;general;/
>> usr/lib/x86_64-linux-gnu/libpthread.so;general;/usr/
>> lib/x86_64-linux-gnu/libboost_serialization.so;
>> rdtrajectory_LIB_DEPENDS:STATIC=general;Trajectory;general;
>> RDGeometryLib;general;RDGeneral;general;GraphMol;general;/
>> usr/lib/x86_64-linux-gnu/libpython2.7.so;general;/usr/lib/
>> x86_64-linux-gnu/libboost_python.so;general;/usr/lib/
>> x86_64-linux-gnu/libboost_thread.so;general;/usr/lib/
>> x86_64-linux-gnu/libboost_system.so;general;/usr/lib/
>> x86_64-linux-gnu/libpthread.so;general;/usr/lib/x86_64-
>> linux-gnu/libboost_serialization.so;
>>
>>
>>
>>
>> On Mon, Mar 19, 2018 at 3:27 AM, Greg Landrum <gre...@gm...>
>> wrote:
>>
>>> Well, I don't see anything obvious there to explain why the
>>> serialization library is being treated differently from the others.
>>>
>>> Could you please look at (and send) the output of;
>>> grep boost_THREAD CMakeCache.txt
>>> grep boost_SERIAL CMakeCache.txt
>>>
>>> Best,
>>> -greg
>>>
>>>
>>>
>>> On Sun, Mar 18, 2018 at 10:31 PM, TJ O'Donnell <tj...@ac...> wrote:
>>>
>>>> FYI I cloned  https://github.com/rdkit/rdkit.git
>>>> and get the same error
>>>>
>>>> TJ
>>>>
>>>> On Sun, Mar 18, 2018 at 7:31 PM, TJ O'Donnell <tj...@ac...> wrote:
>>>>
>>>>> Thanks for the quick reply, Greg.  I just did a git pull and it merged
>>>>> in lots of files.
>>>>> I may try a clone to a "fresh" folder and see how that goes.
>>>>> Anyway, here's the output from  VERBOSE=1 make FilterCatalog
>>>>>
>>>>> tj@vmmint:~/RDKit/rdkit/build$ VERBOSE=1 make FilterCatalog
>>>>> /usr/bin/cmake -H/home/tj/RDKit/rdkit -B/home/tj/RDKit/rdkit/build
>>>>> --check-build-system CMakeFiles/Makefile.cmake 0
>>>>> make -f CMakeFiles/Makefile2 FilterCatalog
>>>>> make[1]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -H/home/tj/RDKit/rdkit -B/home/tj/RDKit/rdkit/build
>>>>> --check-build-system CMakeFiles/Makefile.cmake 0
>>>>> /usr/bin/cmake -E cmake_progress_start /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>> 9
>>>>> make -f CMakeFiles/Makefile2 Code/GraphMol/FilterCatalog/CM
>>>>> akeFiles/FilterCatalog.dir/all
>>>>> make[2]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make
>>>>> Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/RDGeneral
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/RDGeneral
>>>>> /home/tj/RDKit/rdkit/build/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake
>>>>> --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make
>>>>> Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/RDGeneral/CMakeFiles/RDG
>>>>> eneral.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>> 64
>>>>> [ 11%] Built target RDGeneral
>>>>> make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make
>>>>> Code/DataStructs/CMakeFiles/DataStructs.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/DataStructs
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/DataStructs
>>>>> /home/tj/RDKit/rdkit/build/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake
>>>>> --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make
>>>>> Code/DataStructs/CMakeFiles/DataStructs.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/DataStructs/CMakeFiles/D
>>>>> ataStructs.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>> 7
>>>>> [ 22%] Built target DataStructs
>>>>> make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make
>>>>> Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/Geometry
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/Geometry
>>>>> /home/tj/RDKit/rdkit/build/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake
>>>>> --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make
>>>>> Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/Geometry/CMakeFiles/RDGe
>>>>> ometryLib.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>> 66
>>>>> [ 33%] Built target RDGeometryLib
>>>>> make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make
>>>>> Code/GraphMol/CMakeFiles/GraphMol.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/GraphMol
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/GraphMol
>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake
>>>>> --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make
>>>>> Code/GraphMol/CMakeFiles/GraphMol.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/GraphMol/CMakeFiles/Grap
>>>>> hMol.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>> 35 36 37 38
>>>>> [ 77%] Built target GraphMol
>>>>> make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make
>>>>> Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/GraphMol/Subgraphs
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/GraphMol/Subgraphs
>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/Subgraphs/CMakeFile
>>>>> s/Subgraphs.dir/DependInfo.cmake --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make
>>>>> Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/GraphMol/Subgraphs/CMake
>>>>> Files/Subgraphs.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMa
>>>>> keFiles
>>>>> [ 77%] Built target Subgraphs
>>>>> make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make
>>>>> Code/Catalogs/CMakeFiles/Catalogs.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/Catalogs
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/Catalogs
>>>>> /home/tj/RDKit/rdkit/build/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake
>>>>> --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make
>>>>> Code/Catalogs/CMakeFiles/Catalogs.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/Catalogs/CMakeFiles/Cata
>>>>> logs.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMa
>>>>> keFiles
>>>>> [ 77%] Built target Catalogs
>>>>> make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make
>>>>> Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/GraphMol/SmilesParse
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/GraphMol/SmilesParse
>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/SmilesParse/CMakeFi
>>>>> les/SmilesParse.dir/DependInfo.cmake --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make
>>>>> Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/GraphMol/SmilesParse/CMa
>>>>> keFiles/SmilesParse.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMakeFiles
>>>>> 71
>>>>> [ 88%] Built target SmilesParse
>>>>> make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make
>>>>> Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/GraphMol/Substruct
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/GraphMol/Substruct
>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/Substruct/CMakeFile
>>>>> s/SubstructMatch.dir/DependInfo.cmake --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make
>>>>> Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> make[3]: Nothing to be done for `Code/GraphMol/Substruct/CMake
>>>>> Files/SubstructMatch.dir/build'.
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> /usr/bin/cmake -E cmake_progress_report /home/tj/RDKit/rdkit/build/CMa
>>>>> keFiles
>>>>> [ 88%] Built target SubstructMatch
>>>>> make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make
>>>>> Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> cd /home/tj/RDKit/rdkit/build && /usr/bin/cmake -E cmake_depends "Unix
>>>>> Makefiles" /home/tj/RDKit/rdkit /home/tj/RDKit/rdkit/Code/GraphMol/FilterCatalog
>>>>> /home/tj/RDKit/rdkit/build /home/tj/RDKit/rdkit/build/Code/GraphMol/FilterCatalog
>>>>> /home/tj/RDKit/rdkit/build/Code/GraphMol/FilterCatalog/CMake
>>>>> Files/FilterCatalog.dir/DependInfo.cmake --color=
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make
>>>>> Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
>>>>> make[3]: Entering directory `/home/tj/RDKit/rdkit/build'
>>>>> Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
>>>>> cd /home/tj/RDKit/rdkit/build/Code/GraphMol/FilterCatalog &&
>>>>> /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt
>>>>> --verbose=1
>>>>> /usr/bin/c++  -fPIC  -mpopcnt -Wno-deprecated -Wno-unused-function
>>>>> -fno-strict-aliasing -Wall -Wextra -fPIC -O3 -DNDEBUG   -shared
>>>>> -Wl,-soname,libRDKitFilterCatalog.so.1 -o
>>>>> ../../../lib/libRDKitFilterCatalog.so.1.2018.03.1.dev1
>>>>> CMakeFiles/FilterCatalog.dir/Filters.cpp.o
>>>>> CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o
>>>>> CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o
>>>>> CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o
>>>>> CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
>>>>> ../../../lib/libRDKitSubgraphs.so.1.2018.03.1.dev1
>>>>> ../../../lib/libRDKitSubstructMatch.so.1.2018.03.1.dev1
>>>>> ../../../lib/libRDKitSmilesParse.so.1.2018.03.1.dev1
>>>>> ../../../lib/libRDKitGraphMol.so.1.2018.03.1.dev1
>>>>> ../../../lib/libRDKitRDGeometryLib.so.1.2018.03.1.dev1
>>>>> ../../../lib/libRDKitCatalogs.so.1.2018.03.1.dev1
>>>>> ../../../lib/libRDKitRDGeneral.so.1.2018.03.1.dev1
>>>>> -lBoost::serialization ../../../lib/libRDKitDataStructs.so.1.2018.03.1.dev1
>>>>> ../../../lib/libRDKitRDGeneral.so.1.2018.03.1.dev1 -lboost_thread
>>>>> -lboost_system -lpthread -Wl,-rpath,/home/tj/RDKit/rdkit/build/lib:
>>>>> /usr/bin/ld: cannot find -lBoost::serialization
>>>>> collect2: error: ld returned 1 exit status
>>>>> make[3]: *** [lib/libRDKitFilterCatalog.so.1.2018.03.1.dev1] Error 1
>>>>> make[3]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make[2]: *** [Code/GraphMol/FilterCatalog/C
>>>>> MakeFiles/FilterCatalog.dir/all] Error 2
>>>>> make[2]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make[1]: *** [Code/GraphMol/FilterCatalog/C
>>>>> MakeFiles/FilterCatalog.dir/rule] Error 2
>>>>> make[1]: Leaving directory `/home/tj/RDKit/rdkit/build'
>>>>> make: *** [FilterCatalog] Error 2
>>>>>
>>>>> On Sun, Mar 18, 2018 at 3:48 PM, Greg Landrum <gre...@gm...>
>>>>> wrote:
>>>>>
>>>>>> Hi TJ,
>>>>>>
>>>>>> Hrm, that's ugly. Just to confirm: Are you building the master branch
>>>>>> from github?
>>>>>> It looks like there's no fundamental problem with master; at least
>>>>>> the travis builds pass: https://travis-ci.org/rdkit/rdkit
>>>>>>
>>>>>> To help track this down, can you please send the results of doing:
>>>>>> VERBOSE=1 make FilterCatalog
>>>>>>
>>>>>> Best,
>>>>>> -greg
>>>>>>
>>>>>>
>>>>>> On Sun, Mar 18, 2018 at 11:27 PM, TJ O'Donnell <tj...@ac...> wrote:
>>>>>>
>>>>>>> I'm trying to build rdkit from the latest git source.
>>>>>>> Linux Mint 17
>>>>>>>
>>>>>>> I get this error
>>>>>>> [ 57%] Building CXX object Code/GraphMol/FilterCatalog/CM
>>>>>>> akeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
>>>>>>> Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
>>>>>>> /usr/bin/ld: cannot find -lBoost::serialization
>>>>>>> collect2: error: ld returned 1 exit status
>>>>>>> make[2]: *** [lib/libRDKitFilterCatalog.so.1.2018.03.1.dev1] Error 1
>>>>>>> make[1]: *** [Code/GraphMol/FilterCatalog/C
>>>>>>> MakeFiles/FilterCatalog.dir/all] Error 2
>>>>>>> make: *** [all] Error 2
>>>>>>>
>>>>>>> but cmake seemed to find this lib OK
>>>>>>> cmake .. -DRDK_BUILD_INCHI_SUPPORT=ON
>>>>>>> -- The C compiler identification is GNU 4.8.4
>>>>>>> -- The CXX compiler identification is GNU 4.8.4
>>>>>>> ....
>>>>>>> -- Found Threads: TRUE
>>>>>>> -- Boost version: 1.54.0
>>>>>>> -- Found the following Boost libraries:
>>>>>>> --   thread
>>>>>>> --   system
>>>>>>> -- Boost version: 1.54.0
>>>>>>> -- Found the following Boost libraries:
>>>>>>> --   serialization
>>>>>>> == Using strict rotor definition
>>>>>>> == Updating Filters.cpp from pains file
>>>>>>>
>>>>>>> Can you help me figure out how to get past this?
>>>>>>>
>>>>>>> Thanks,
>>>>>>> TJ
>>>>>>>
>>>>>>> ------------------------------------------------------------
>>>>>>> ------------------
>>>>>>> Check out the vibrant tech community on one of the world's most
>>>>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>>>>>>> _______________________________________________
>>>>>>> Rdkit-devel mailing list
>>>>>>> Rdk...@li...
>>>>>>> https://lists.sourceforge.net/lists/listinfo/rdkit-devel
>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>