Re: [Rdkit-discuss] interactive py3Dmol in jupyter notebook - not all py3Dmol.view() are visible

[Greg L. <gre...@gm...>]

Ah got it. I think this is a 3dmol.js/py3dmol question, not an RDKit
question.
I'd suggest asking on the 3dmol.js issue tracker:
https://github.com/3dmol/3Dmol.js/issues

On Tue, Mar 28, 2017 at 4:06 PM, gosia olejniczak <
gos...@gm...> wrote:

> dear Greg,
>
> thank you for your prompt response,
> yes, that notebook works just fine,
> however if i try to call py3Dmol.view() many more times, only few windows
> appear (and they disappear as i scroll down to run cells below), example:
>
> http://nbviewer.jupyter.org/github/gosiao/test_notebooks/
> blob/master/notes_m1.ipynb
>
> best regards,
> gosia
>
>
> 2017-03-28 16:02 GMT+02:00 Greg Landrum <gre...@gm...>:
>
>> I may not have understood the question correctly: when I open that page
>> all frames are active.
>>
>> On Tue, Mar 28, 2017 at 3:56 PM, gosia olejniczak <
>> gos...@gm...> wrote:
>>
>>> hello,
>>>
>>> i'm using rdkit with py3Dmol in jupyter notebook, as in this example:
>>> http://nbviewer.jupyter.org/github/greglandrum/rdkit_blog/bl
>>> ob/master/notebooks/Trying%20py3Dmol.ipynb
>>>
>>> is there a limit of how many py3Dmol.view() frames can be in one
>>> notebook?
>>> i'm asking because it seems that jupyter notebook can handle only a
>>> limited number of these: with running all cells, even one-by-one, only the
>>> last few frames are visible and the view of the first ones disappear,
>>> restarting does not help.
>>>
>>> can that be changed somewhere?
>>> thank you and best regards,
>>> gosia
>>>
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>