Re: [Rdkit-discuss] Struggling with apache + rdkit + django

[Markus S. <mar...@gm...>]

Hi Stephane,

Add some Python code to your uwsgi.py file that prints out the environment that the Python interpreter sees (maybe comment out everything else) when it is called by the Apache. It is very likely that the Apache calls another Python interpreter than you expect. What Paolo writes is probably the solution to your problem.

Markus

-------------------------------------
|  Markus Sitzmann
|  mar...@gm...

> On 21.06.2016, at 21:24, Michał Nowotka <mm...@gm...> wrote:
> 
> Hi Stéphane,
> 
> Just to let you know about two things:
> 
> 1. ChEMBL web services are a Django application written using RDKit.
> We deploy it using gunicorn and Apache through Reverse Proxy and put
> on a Virtual Machine named myChEMBL that you can download. Here are
> some example configuration files:
> https://github.com/chembl/mychembl/tree/master/webservices/conf but
> I'm happy to explain more if you want.
> 
> 2. There is a project called Beaker that exposes most of RDKit methods
> as RESTful API. The source code is here:
> https://github.com/chembl/chembl_beaker and a live instance here:
> https://www.ebi.ac.uk/chembl/api/utils/docs
> 
> Kind regards,
> 
> Michał Nowotka
> 
> On Tue, Jun 21, 2016 at 7:46 PM, Téletchéa Stéphane
> <ste...@un...> wrote:
>> Le 21/06/2016 20:18, TJ O'Donnell a écrit :
>>> I would suggest setting PYTHONPATH in
>>> config or ini files for
>>> Apache or Django or uwsgi
>>> Not sure which is required.
>> 
>> Dear all,
>> 
>> This is already indicated using a WSGIprocessGroup :
>> 
>> WSGIDaemonProcess manageLibrary
>> python-path=/path/to/project/projets/manageLibrary:/path/to/project/projets/manageLibrary/tools/django1.8/lib/python2.7/site-packages:/path/to/project/projets/manageLibrary/tools/rdkit/lib:/path/to/project/projets/manageLibrary/tools/rdkit/lib/python2.7/site-packages
>> display-name=manageLibrary
>>     WSGIProcessGroup manageLibrary
>>     WSGIScriptAlias /tools/manageLibrary
>> '/path/to/project/projets/manageLibrary/manageLibrary/wsgi.py'
>> 
>> 
>> See more in detail here:
>> https://www.digitalocean.com/community/tutorials/how-to-serve-django-applications-with-apache-and-mod_wsgi-on-ubuntu-14-04
>> 
>> I have also checked permisisons and files with no luck (and no output in
>> logs ...).
>> 
>> I may start from scratch with a simple django project to find if is
>> already works there ...
>> 
>> Many Thanks, if you have any direction I'll be happy to test,
>> 
>> Stéphane
>> 
>> --
>> Assistant Professor in BioInformatics, UFIP, UMR 6286 CNRS, Team Protein Design In Silico
>> UFR Sciences et Techniques, 2, rue de la Houssinière, Bât. 25, 44322 Nantes cedex 03, France
>> Tél : +33 251 125 636 / Fax : +33 251 125 632
>> http://www.ufip.univ-nantes.fr/ - http://www.steletch.org
>> 
>> 
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