Re: [Rdkit-devel] Beta of Q1 2016 release now up

[Gianluca S. <gi...@gm...>]

On Tue, Apr 12, 2016 at 11:51 AM, Gianluca Sforna <gi...@gm...> wrote:
> On Mon, Apr 11, 2016 at 1:20 PM, Greg Landrum <gre...@gm...> wrote:
>> This could be the issue fixed by this PR from Matt Swain:
>> https://github.com/rdkit/rdkit/pull/856
>
> Yeah, that's it. Thanks!

But no joy still....


[ 36%] Building CXX object
Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2016_03_1b1/python2/Code/GraphMol/SmilesParse
&& /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHR
EADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS
-I/usr/include/python2.7
-I/builddir/build/BUILD/rdkit-Release_2016_03_1b1/pyt
hon2/Code  -O2 -g -pipe -Wall -Werror=format-security
-Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong
--param=ssp-buffer-size=
4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1
-m64 -mtune=generic  -mpopcnt -Wno-deprecated -Wno-unused-function -f
no-strict-aliasing -fPIC -Wall -Wextra -O2 -g -DNDEBUG -fPIC
-DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o
CMakeFiles/SmilesParse.dir/lex.yys
marts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2016_03_1b1/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
smiles.ll:40:52: error: 'yyscan_t' has not been declared
 size_t setup_smiles_string(const std::string &text,yyscan_t yyscanner){
                                                    ^
smiles.ll: In function 'size_t setup_smiles_string(const string&, int)':
smiles.ll:49:46: error: too many arguments to function 'void*
yysmiles_alloc(yy_size_t)'
   buf = (char *) yysmiles_alloc(n ,yyscanner );
                                              ^
/builddir/build/BUILD/rdkit-Release_2016_03_1b1/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:326:7:
note: declared here
 void *yysmiles_alloc (yy_size_t  );
       ^
smiles.ll:69:45: error: too many arguments to function
'yy_buffer_state* yysmiles__scan_buffer(char*, yy_size_t)'
   b = yysmiles__scan_buffer(buf,n ,yyscanner);
                                             ^
/builddir/build/BUILD/rdkit-Release_2016_03_1b1/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:322:17:
note: declared here
 YY_BUFFER_STATE yysmiles__scan_buffer (char *base,yy_size_t size  );




-- 
Gianluca Sforna

http://plus.google.com/+gianlucasforna - http://twitter.com/giallu
Tinker Garage - http://tinkergarage.it